Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181317g00004 ATGCCTTGCAACGATATCCATCTAATAGATGCAATTGGTCACGTTGTCGGCAAGGAGGATGTGTCTGATTTGGTTACTAAGGCGGGGAAGGAGAGTAGGATTCTGACCATTTACATGGAGGATTTAGATAAGAATCGGTTGAAATGCACTTTGTTCGGAAGTATGATTAGAAATAGCATGTACACCTCTAGAGTGTTCTTTAACCCAGATTTTCCAGAAGTGGGTGCATTCAGAGAAAGGCTCGCAGAGCATCTCCCACATCTAGAGTCAGCGTCAGATGTCTGCGATTTTTGCCCCAGGAAGGTTTTGGTTAACAATAATCGCTACTGGTGTAATCAGTGTCGAAAGGGCGGATTGAATCCTCTTATTAGGTACTGTGTTGGCGTAGTCGTTGCAGATGGAACTGGAAGTGCAAAACTGATGCTTTGGAACAGGGAAGTAAGGCTAATCGTCGGCAAAAATCCTGAAGAAGTCAAGAATGATTGTGGTCAAGAAGGTGGTAGCTCACATTCGAAGGTTCTTGATGAAATTCTTGAGAAAAGGTACCTCTTTAAATTGGCAATTACTGAAAAAACCATTGGTTCGGTGGATCCTGTTTATAGCGTCATTAAGCCATGTGAAGACGAAGGAGTTGTTCAGGAGCATTCATCTCAGACATCTTCGCTTGACAACATGGGTTTCTTCGATGAGATGGGGTGTATTACGGTGTTAGGTGCAAGCCAGGATAATGAATCTGAAGTGAACTGTATCACTGATGTCAACCTATCCAAGACTGTGACTGAGAGCAATGGCGAGACTGGTTTGATAACTCCCACCAAGGCGATCGAAGCAAACTTTGAGCAAACTGTGTCTGTTATAGAAATATCTCCCAATGCTATCCAGCACTCTACCAACAAAACCTTCAAGCGCGGTGGTGGGAAACGAAAGCTGGAATGA 936 0.438 MPCNDIHLIDAIGHVVGKEDVSDLVTKAGKESRILTIYMEDLDKNRLKCTLFGSMIRNSMYTSRVFFNPDFPEVGAFRERLAEHLPHLESASDVCDFCPRKVLVNNNRYWCNQCRKGGLNPLIRYCVGVVVADGTGSAKLMLWNREVRLIVGKNPEEVKNDCGQEGGSSHSKVLDEILEKRYLFKLAITEKTIGSVDPVYSVIKPCEDEGVVQEHSSQTSSLDNMGFFDEMGCITVLGASQDNESEVNCITDVNLSKTVTESNGETGLITPTKAIEANFEQTVSVIEISPNAIQHSTNKTFKRGGGKRKLE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181317g00004 311 Pfam Replication factor-A C terminal domain 95 193 IPR013955 -
Stsc181317g00004 311 Gene3D - 1 59 IPR012340 -
Stsc181317g00004 311 SUPERFAMILY Nucleic acid-binding proteins 7 86 IPR012340 -
Stsc181317g00004 311 Gene3D - 92 214 IPR012340 -
Stsc181317g00004 311 SUPERFAMILY Nucleic acid-binding proteins 94 222 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181317g00004 Stsc-Chr181317 16572 18671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181317g00004 59 195 Core DNA Replication Machinery Family AT5G08020 26.351 1.28e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181317g00004 - - ahf:112718168 216.083