Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181316g00011 ATGGAAGAAGAAGAATGCAACGTTTCTTCGGTGCTCCACCACCTCATCTCAGCTGCCACCGAAATTTCACAGATCGACGGCTTCAAGCTCGTCATCAAGAGACAGTGCTTCGACCTCAGCCGTAGGATTAGGTTCCTCGCGCCTCTCTTCTATGAGCTTCTCGACGTTACAGACGCCCTCCCAAACGACGCCGTTTCAGCGCTCCTCTCTCTTAAGGAAGCTCTTGCCTCAGCCAAGGAACTCCTCCAATTTTGTTGCCGAGCAAGCCAGATATTGGAGAGAGAGCAAATTAAGTGCAAATTTAATGATGTCGCCGTTCATTTTGAAGAAGCTATAGGCAAGATATCCTGTGACAAACTTGATATATCTGAAGAAGTCAAGGAGCAGGTTGCACTCGTGACTGTACAATTTGGAAGAGGCAGGGAGCTTTTTGATCCACCTGGTCTTCAGCTTTATGATGATCTGTTGTCCATTTGCAACCAGAGCTATGATGTGATTCCTGAACAAGACAAACTGCATATAATCTGCGAAAAGCTGCACTTTACGAGGGTGGGTGATATCAAACAAGAGTTGATTGCACTTGATAAGATGTTTGTAGACATGGGTGATCAGTTTGAGAAAAGCACACAGAATATATCTACAGTCTTGAAAAAAATTGAAGATTTCATACTGACAGAATCTGCAGATGTTAATACGCTATCAAGTGATGATTCCTCTACTCAAGCCGATGAGTCATACACAAAACTATGTTCTCAATCACTGGTTATACCAGATGAGTTTCGCTGCCCAATATCTCTGGAGCTAATGAAAGATCCTGTAATCATTTCTACAGGACAGACATATGAGCGAGCATGCATAAAGAAATGGATTGAAGCCGGCCATGGAACATGTCCTAAGACTCAGCAGATTCTTTCGAGCTCTCTCCTTATACCCAACCATGTTCTATATATCCTGATATCAAATTGGTGTGAAGCAAATGGAGTCGAGCCACCTAAAAGAACAGGGAAGTTACGACTCTGCAAGGCAACATCAGATGGCACTTCTGAACTCATAGATATTGATACTCTATTGAGCAGACTTACTTCCAGTGACACTGAGGATCAGAGACGCACAGCAGGCGAGTGTTACATCATAATTACTTCAGCACTTCCTCTCTCTCCCACTCCCGAGAAAACACATACCCCACACACACACACACACAGGTTAAAAGTGAAACTACTGGCTCAATTTTGA 1233 0.4371 MEEEECNVSSVLHHLISAATEISQIDGFKLVIKRQCFDLSRRIRFLAPLFYELLDVTDALPNDAVSALLSLKEALASAKELLQFCCRASQILEREQIKCKFNDVAVHFEEAIGKISCDKLDISEEVKEQVALVTVQFGRGRELFDPPGLQLYDDLLSICNQSYDVIPEQDKLHIICEKLHFTRVGDIKQELIALDKMFVDMGDQFEKSTQNISTVLKKIEDFILTESADVNTLSSDDSSTQADESYTKLCSQSLVIPDEFRCPISLELMKDPVIISTGQTYERACIKKWIEAGHGTCPKTQQILSSSLLIPNHVLYILISNWCEANGVEPPKRTGKLRLCKATSDGTSELIDIDTLLSRLTSSDTEDQRRTAGECYIIITSALPLSPTPEKTHTPHTHTHRLKVKLLAQF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181316g00011 410 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Stsc181316g00011 410 CDD RING-Ubox_PUB 257 309 IPR045210 -
Stsc181316g00011 410 Gene3D - 9 118 IPR036537 GO:0007166
Stsc181316g00011 410 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Stsc181316g00011 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 329 IPR013083 -
Stsc181316g00011 410 FunFam RING-type E3 ubiquitin transferase 255 329 - -
Stsc181316g00011 410 PANTHER U BOX DOMAIN-CONTAINING 33 374 - -
Stsc181316g00011 410 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Stsc181316g00011 410 SUPERFAMILY RING/U-box 255 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181316g00011 Stsc-Chr181316 95145 99291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181316g00011 1 378 U-box Gene Family AT3G46510 42.674 1.10e-103 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181316g00011 - - gmx:121172605 404.831