Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181316g00004 ATGGCAATGAGGGCGGCAGCATCAGCAGCTCCTCGGGGTTTGCGGCGGCTCTTCTGCACAAACACGGCGAAACCTTCTTCAAGCTTTCCTTTCATTCCGCCACCGTCTACAGGGGCGCAGCCAGCTCGGCCCGTGGCAGAACCCAACACCAACCTCTTTATCTCTGGGCTTAGCAAACGTACTACCACAGAGAAGTTGAGAGAAGAATTTTCAAAGTTTGGGGAAGTTGTTCAGGCAAGGGTGGTAACTGACCGAGTATCAGGTTACTCTAAGGGGTTCGGTTTTGTGAAGTATGCCACTCTAGAAGATGCTGCAAAGGGCATCGAGGGCATGGATGGCAAGTTTTTGGATGGGTGGGTTATTTTTGCTGAGTACGCACGACCAAGACCTCCACCAGGACAACCTGTAAATGACATGCCACCGCATTATGGGAGGCAGTGA 441 0.5215 MAMRAAASAAPRGLRRLFCTNTAKPSSSFPFIPPPSTGAQPARPVAEPNTNLFISGLSKRTTTEKLREEFSKFGEVVQARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPVNDMPPHYGRQ 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181316g00004 146 Gene3D - 20 135 IPR012677 -
Stsc181316g00004 146 FunFam RNA recognition motif-containing protein 29 140 - -
Stsc181316g00004 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 118 IPR000504 GO:0003723
Stsc181316g00004 146 PANTHER NUCLEOLAR PROTEIN 8 34 131 - -
Stsc181316g00004 146 SMART rrm1_1 51 124 IPR000504 GO:0003723
Stsc181316g00004 146 MobiDBLite consensus disorder prediction 127 146 - -
Stsc181316g00004 146 SUPERFAMILY RNA-binding domain, RBD 28 143 IPR035979 GO:0003676
Stsc181316g00004 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181316g00004 Stsc-Chr181316 44223 47663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181316g00004 49 130 Eukaryotic Initiation Factors Gene Family AT4G34110 32.927 1.19e-07 47.8