Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181315g00007 ATGGCCATGGGGCCTCCGGATTTCGACGAAGAGGAGGAGATTCCGTTTAGGGAAGGAACTTCGTTCATCTCTTCGTCTTCTCCCAGGAAAGGACTGCCGCATCACGGCAGTCAAAATCAAGTTCACCATAATCACAATCACAATCACAACAGTCATGCTTACAGCTTCGAGACGACCACGGCCGCCGTTCTCTCTCCGGATTTGCCCAAATCTTCTGTATTCAGGCTCTTGCGGATCACGCGAATCAGGAGCCTTTATGTAGTCTTAATCAAAGCCAAGATCAACCTACTCCTCCCCTTTGGTCCACTCGCCATTGCCCTCCATTATCTCACCGGAAAACATGGATGGGTGTTCTTCTTCAGCTTGTTGGGTATCACTCCATTGGCGGAGCGTTTGGGTTATGTTACTGAGCAACTTGCATTCTACACAGGACCAACAGTTGGGGGTCTGCTGAATGCCACATTTGGCAACGCAACTGAAATGATTATATCGATCTTTGCATTGAAGAACGATATGATTAGGGTCGTTCAGCAATCGTTACTCGGCTCAATCCTGTCGAATATGCTCTTAGTTCTTGGTTGTGCATTCTTTACCGGTGGGATTGTCCACTACAAAAAGGTGCAAGTTTTCAATAAGGCGGCTGCTGTTGTCAATTCCGGGTTGCTTTTGATGGCTGTGATGGGCATACTGTTCCCTGCAGTACTTCACTTTACTCATTCGGAGGTTCACCTTGGGAAGTCGGTGTTATCTCTATCAAGATTTAGCAGCTGCGTGATGCTGATCGCGTATGCGAGCTATCTTTTTTTTCAACTTAAGAGCCAGCCCAATCTTTATAGTTCTGTGGATGAGGAAGGAGTTAGTGGTGAAAATTCAGATGAGGAGGAAGAACTTGAATTAACTCAAACGGAAGCAATAGTCTGGCTTGCTATCTTGACAGCATGGGTGTCTTTATTGTCGGGGTACCTTGTAGACGCCATCGAGGGAGCATCTGAGTCATTAAATATGTCGATGGCTTTTATCAGTGTCATCTTGCTCCCAATCGTAGGCAATGCTGCAGAACATGCAAGTGCTATCATGTTTGCAATGAAGGACAAACTTGATATCACCATTGGAGTTGCTGTTGGATCGTCTACACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGTATGGGTAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACCGCCACGCTTTTTATCACGGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTTATTGTAGCTGCCAGTTTCTTCGTACATGTAGACCCTAAAAGTGGTGATGACTAG 1374 0.4512 MAMGPPDFDEEEEIPFREGTSFISSSSPRKGLPHHGSQNQVHHNHNHNHNSHAYSFETTTAAVLSPDLPKSSVFRLLRITRIRSLYVVLIKAKINLLLPFGPLAIALHYLTGKHGWVFFFSLLGITPLAERLGYVTEQLAFYTGPTVGGLLNATFGNATEMIISIFALKNDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCVMLIAYASYLFFQLKSQPNLYSSVDEEGVSGENSDEEEELELTQTEAIVWLAILTAWVSLLSGYLVDAIEGASESLNMSMAFISVILLPIVGNAAEHASAIMFAMKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKSGDD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181315g00007 457 Pfam Sodium/calcium exchanger protein 305 444 IPR004837 GO:0016020|GO:0055085
Stsc181315g00007 457 Pfam Sodium/calcium exchanger protein 116 271 IPR004837 GO:0016020|GO:0055085
Stsc181315g00007 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 39 452 IPR004713 GO:0006812|GO:0008324|GO:0016020
Stsc181315g00007 457 FunFam Vacuolar cation/proton exchanger 292 448 - -
Stsc181315g00007 457 NCBIfam calcium/proton exchanger 87 447 - -
Stsc181315g00007 457 NCBIfam calcium/proton exchanger 97 447 IPR004798 GO:0006816|GO:0015369
Stsc181315g00007 457 MobiDBLite consensus disorder prediction 21 39 - -
Stsc181315g00007 457 Gene3D - 145 448 IPR044880 -
Stsc181315g00007 457 MobiDBLite consensus disorder prediction 21 50 - -
Stsc181315g00007 457 FunFam Vacuolar cation/proton exchanger 145 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181315g00007 Stsc-Chr181315 50739 57410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181315g00007 65 452 Antiporters AT3G13320 74.293 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181315g00007 K07300 - gmx:100806000 670.618