Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181315g00002 ATGACGACTCGAATAGCGCCTGGTGTCGGCGCCAACTTGCTCGGCCAACACTCCGCCGAGAGGAATCAAGACGCCACCGCCTATGTCGGCAATCTCGACCCTCAAGTCCCCGAAGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCCGTCGTTAATGTGTACGTTCCCAAGGACAGAGTCACCAACCAGCACCAGGGATATGGATTTGTTGAATTCCGTAGTGAAGAAGATGCTGACTATGCAATCAAAGTGCTTAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCGGATGTAGATGAAAAGCTGTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACTGGAAATTCCCGCGGCTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCCGATTCTGCTATTGAGGCAATGAACGGGCAATATCTTTGCAATCAAAGAGTTTTGGCTGCAAGCAATCCCACTGCGCAGAAGAGTAGGCCTCATACGAGATTTGCCAGTGCACCTCCAACGCTTGCCAATGTTGCTCAGGTTAATGGTACCGTTCCTGCTCCGGTGCCTCCTCACCCCTTTGCTAATGGTGTGGCTCCACCACCCATTCCTGCCCTCCGACCACCCCCACCACCCCCTCAAGCAGCAGCATTTCAGCCTATGCCAGGGGCTGGGCAACCAGCATGGCATCAACAGCAGCCCGGTCTACCACCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCTGGTATGCCAATGCCACCACCTCCACAAGCTGTTTCGGCTCCTCCAAGGCCTCTTCCACCACCAACAGGAATGGTAAGCCAACCACCTGTTTGGCGACCACAACCGCCGCCACCGCAGCAACAAGGTGGACGACCTATGGGATATCTTCAACCCTCAATGCCTCCACCACCTTCCTATAACCAGATGCCGCCACCTCAATGA 1059 0.5222 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNQRVLAASNPTAQKSRPHTRFASAPPTLANVAQVNGTVPAPVPPHPFANGVAPPPIPALRPPPPPPQAAAFQPMPGAGQPAWHQQQPGLPPGMPPPQVQQFRPPPSGMPMPPPPQAVSAPPRPLPPPTGMVSQPPVWRPQPPPPQQQGGRPMGYLQPSMPPPPSYNQMPPPQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181315g00002 352 MobiDBLite consensus disorder prediction 267 328 - -
Stsc181315g00002 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Stsc181315g00002 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Stsc181315g00002 352 CDD RRM1_SF3B4 28 100 IPR034158 -
Stsc181315g00002 352 FunFam splicing factor 3B subunit 4 109 196 - -
Stsc181315g00002 352 SUPERFAMILY RNA-binding domain, RBD 25 184 IPR035979 GO:0003676
Stsc181315g00002 352 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 183 - -
Stsc181315g00002 352 Gene3D - 111 196 IPR012677 -
Stsc181315g00002 352 SMART rrm1_1 113 187 IPR000504 GO:0003723
Stsc181315g00002 352 SMART rrm1_1 26 99 IPR000504 GO:0003723
Stsc181315g00002 352 MobiDBLite consensus disorder prediction 219 251 - -
Stsc181315g00002 352 CDD RRM2_SF3B4 111 184 IPR034159 -
Stsc181315g00002 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 192 IPR000504 GO:0003723
Stsc181315g00002 352 Gene3D - 16 110 IPR012677 -
Stsc181315g00002 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Stsc181315g00002 352 FunFam Splicing factor 3b subunit 4 16 108 - -
Stsc181315g00002 352 MobiDBLite consensus disorder prediction 335 352 - -
Stsc181315g00002 352 MobiDBLite consensus disorder prediction 215 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181315g00002 Stsc-Chr181315 8348 11772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181315g00002 18 277 Eukaryotic Initiation Factors Gene Family AT4G34110 27.240 6.02e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181315g00002 K12831 - gmx:100792707 456.832