Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181314g00017 ATGCAAAATTCAAACGCTTCGACGTCGTCTCCGGCGGCCGTGGACACGGCGCCGTTTCTCCTCCGAAGCCGCCGTTTCCTCCGCCGCACGCCGCCTCCACTTCGTACGGCGGCTCGTCTCTTCCGTCAGGCATCAGGGCGGAGAATGATGCTCCGGGAACCATCCGTTCGGGTCCGGGAGGCGGCGGCGGCGGAGCTTGAGGGGCGGCAGAGCGACTGGGCCTACTCGAAACCGGTGGTGGTGGTGGACGTGCTTTGGAACCTGGCGGTTGCTCTTGTTGGGGCGGCGGTGCTGTGCGTCAGCACGAAAGAGGAGCCATGTGTTCCCTTGAGGGTGTGGATTGTTGGGTACTCCTTGCAAGGTTTGATTCATTCTCTGTGTGTGGTGTTGGAGTACAGGAAGAGAAGGAGAGTGCGGAGGAGCGAAGATGGTTCTGCTTCTTCTAATGGTGGTGGTGATAGGGAATGGAGTTTCAGCTCTGAGAGCGATGATTTGGATTATGATAATGTTGAGCGCTTGCTGCACACTGATGAGAACAGCCTCACGAAGCATGTTGAGTCAGCAAATACCATGCTTTCATTCATATGGTGGGTCATTGGATTCTATTGGGTAACTGCCGGTGGCCAGAGTTTGACGAGGGATTCACCTCAGCTTTATTGGATCTGCATTACATTCCTTGCTTTTGACGTTGTGATTGTGCTGATCTGTGTTGCTGTTGCATGTCTGATTGGTATTGCTGTTTGCTGTTGCCTGCCATGCATACTCGCCATCTTGTATGTCGTAGCAGATCAGGAAGGGGCAACCAAGGAAGAAATTGAGCAGTTGCCAAAATACAAGTTCAGAGTGATAAAGGAATCTAAGAAAGAAGATGATATTCCAGAATCTTCCAAAGGAATAATGATGCAATGTGACAGCGATGCAACTGCTGAACATGCTATTGCCTTAGAAGATGCAGAATGCTGCATCTGCCTTTCTGCCTATGATGATGGTGCTGAACTCAGAGAACTTCCATGCAACCACCACTTCCATTGCACGTGCATCGACAAATGGCTGCTTCTAAATGCCACCTGTCCTCTCTGCAAGTTCAACATTTTAAGGTCTAGTAATCACCACCAAGAAGTTTGA 1125 0.5093 MQNSNASTSSPAAVDTAPFLLRSRRFLRRTPPPLRTAARLFRQASGRRMMLREPSVRVREAAAAELEGRQSDWAYSKPVVVVDVLWNLAVALVGAAVLCVSTKEEPCVPLRVWIVGYSLQGLIHSLCVVLEYRKRRRVRRSEDGSASSNGGGDREWSFSSESDDLDYDNVERLLHTDENSLTKHVESANTMLSFIWWVIGFYWVTAGGQSLTRDSPQLYWICITFLAFDVVIVLICVAVACLIGIAVCCCLPCILAILYVVADQEGATKEEIEQLPKYKFRVIKESKKEDDIPESSKGIMMQCDSDATAEHAIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLLNATCPLCKFNILRSSNHHQEV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181314g00017 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 368 IPR013083 -
Stsc181314g00017 374 Pfam Ring finger domain 319 361 IPR001841 -
Stsc181314g00017 374 SUPERFAMILY RING/U-box 310 367 - -
Stsc181314g00017 374 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Stsc181314g00017 374 PANTHER TARGET OF ERK KINASE MPK-1 41 365 - -
Stsc181314g00017 374 SMART ring_2 320 360 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181314g00017 Stsc-Chr181314 127271 130482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181314g00017 6 371 C3H Transcription Factor Family AT1G68070 47.967 6.84e-118 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181314g00017 - - gmx:100795425 533.487