Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181313g00002 ATGGAGGGGAAGGAGGAAGATGTGTCATTGGGAGCTAACAAGTTCTCAGAGAGGCAGCCAATTGGGACGGCGGCGCAGAGCCAGGACGGAAAGGACTACACAGAGCCACCACCAGCTCCGCTGTTCGAGCCCTCGGAGCTGACCTCATGGTCATTCTACAGGGCCGGAATAGCGGAGTTCGTGGCCACTTTCCTCTTTCTGTATATCACAATCTTGACGGTTATGGGAGTGAATAGGTCTTCTTCCAAGTGTGCCACAGTTGGTATTCAAGGAATTGCTTGGTCCTTTGGTGGCATGATCTTTGCCCTTGTTTACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCGGCAGTGACATTCGGTTTGTTCTTGGCGAGGAAGTTGTCTTTGACAAGGGCAGTGTTCTACATCGTCATGCAGTGCCTTGGAGCAATTTGCGGTGCTGGAGTCGTTAAGGGCTTCGAGGGCAAAACCTTCTTCGGCAGCCACAACGGCGGTGCCAATTTCGTCGCCCCTGGTTACACCAAAGGCGACGGCCTTGGCGCCGAGATTGTTGGCACCTTCATCCTTGTCTACACCGTCTTCTCGGCCACCGATGCCAAGCGCAACGCCAGAGACTCTCACGTCCCTGTAAACCTTGGCTGGGATGACCATTGGATTTTCTGGGTGGGTCCTTTGATTGGAGCAGCTCTAGCGGCTCTCTACCACCAAGTTGTGATCAGGGCCATTCCTTTCAAATCAAGCTAA 750 0.5347 MEGKEEDVSLGANKFSERQPIGTAAQSQDGKDYTEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFEGKTFFGSHNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPVNLGWDDHWIFWVGPLIGAALAALYHQVVIRAIPFKSS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181313g00002 249 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181313g00002 249 PRINTS Major intrinsic protein family signature 220 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181313g00002 249 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181313g00002 249 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181313g00002 249 Gene3D Glycerol uptake facilitator protein. 214 248 IPR023271 -
Stsc181313g00002 249 Gene3D Glycerol uptake facilitator protein. 39 213 IPR023271 -
Stsc181313g00002 249 Pfam Major intrinsic protein 46 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181313g00002 249 CDD MIP 54 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc181313g00002 249 MobiDBLite consensus disorder prediction 1 38 - -
Stsc181313g00002 249 SUPERFAMILY Aquaporin-like 46 242 IPR023271 -
Stsc181313g00002 249 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 215 245 IPR034294 -
Stsc181313g00002 249 ProSitePatterns MIP family signature. 114 122 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181313g00002 Stsc-Chr181313 12927 14484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181313g00002 1 249 Major Intrinsic Protein MIP AT4G23400 71.875 9.52e-135 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181313g00002 K09872 - gmx:100791447 464.922