Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181313g00001 ATGGCGGCGAGTGATCGCACGGTGTTGCAGTTTTCTTCTTCTTCCTCTTCTTCGCAGAGCTTGTCTGCGAGGGTGCACCCTCTTGTTGTGTTCAACATCTGCGACTGCTACGTTCGGCGTCCCGATCAAGCTGAGCGCGTCATCGGAACCCTACTCGGCTCCGTCCTCCCCGACGGCACCGTCGATATTCGCAACTCCTACGCCGTTCCTCATAATGAGTCCGTCGATCAGGTTGCCCTGGATATTGAGTATCACCACAACATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAGTCATAGTTGGATGGTATTCAACTGGTCTTGGAGTTACTGGTGGTAGTGCATTGATCCATGAGTTCTATTCTAGAGAAGTACCCAATCCCATACATTTGACTGTTGATACTGGATTCACAAATGGAGAGGGTACCATAAAAGCATATGTTTCAAACAGTTTATCTCTAGGAGATCGCCAAATTGCTGCACAGTTTCAAGAAGTTCCATTGGATCTTCGTATGGTTGAGGCTGAGAGAGTTGGATTTGATACCTTGAAGTCAACCAACGTTGACAAAATCCCCTCTGATTTAGAAGGGATGGAAATGTCAATGCAACATCTACTAGCCTTGATTGATGACATATACAGATATGTTGATGATGTTGTGGAAGGGCGTGTTGCTCCGGACAACAAAATTGGGCGATTTGTATCAGATGCCGTAGGTGCCCTTCCCAAATTGCCCGCAGAAGTTTTTGATAAGCTTGTTAACGACAGCTTGCAGGATCACTTGCTCTTGCTATATTTGTCTAGCATCACAAGGACACAGCTTAGCTTGGCAGAAAAATTGAACACAGCTGCTCAAATTCTGTGA 867 0.4579 MAASDRTVLQFSSSSSSSQSLSARVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGEGTIKAYVSNSLSLGDRQIAAQFQEVPLDLRMVEAERVGFDTLKSTNVDKIPSDLEGMEMSMQHLLALIDDIYRYVDDVVEGRVAPDNKIGRFVSDAVGALPKLPAEVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181313g00001 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Stsc181313g00001 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc181313g00001 288 FunFam Eukaryotic translation initiation factor 3 subunit F 9 189 - -
Stsc181313g00001 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Stsc181313g00001 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Stsc181313g00001 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
Stsc181313g00001 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 11 285 - -
Stsc181313g00001 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Stsc181313g00001 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181313g00001 Stsc-Chr181313 836 4129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181313g00001 2 288 Eukaryotic Initiation Factors Gene Family AT2G39990 76.289 5.82e-162 450