Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181312g00009 ATGCCCGACGACCACTCCACACCGCCAACAATGAACGACCAGCTCTCCAAGCAAACCTCGATCTTCGGTCTCCGACTCTGTGTGGTCGGCGGCATCTGCGTGGGCGCCGCCATCGTCCTCATCCTGGTCCTCATCTCCCTCTGGCTCGCCTCCAAGCTCTCCACCACCAACAAAAGAAACCGCCACACCATTCCCGACGTCCCCAAAGAAATTCAAGAAATCGAGATAGACCGCCATCCGTCTTCTTCTCCCTCCTCTGCTTCCAAGCCCGTTCCCGGGAACGGGCATGGGCTCCAGCCCGAGTCCGAGCCTGACCGCCTCCCTCCGCCAACTGAAGGAGAAGAAAGCAACAACAACAACGCGGTTTTGGGGATTAAGAGGATTCAGTTTGAGATTGGGAAGAACCACAGAATATCGTACCCGGAACAACGCGCTTTGGTGACGTCATCTTCACAGTCGAATAAGGGAAGCGGAGGAGAGGCCTTGGAACATAATAATCAGCAAGGTGCTACGGTGATCCCTGAGGTTTCACATTTGGGTTGGGGACACTGGTACACCCTCAGGGAGCTTGAACTTGCCACCAACTTCTTCGCCAACGAGAACGTTATCGGCGAAGGTGGCTACGGGATTGTTTACCACGGCATCTTCAACGACAACACTCATGTCGCCATCAAGAATTTGCTCAATAATAAGGGTCAAGCTGAGAAAGAGTTCAAGGTTGAAGTGGAAGCTATAGGGCGAGTTCGCCATAAGAATCTCGTGCGGTTGCTTGGTTATTGTGCTGAAGGTGCTCATAGAATGCTTGTATATGAGTACGTTGATAATGGAAACTTGGAGCAATGGCTACATGGGGATGTTGGGCCACTTAGTCCTCTCACTTGGGAAATTAGAATGAACATAATTCTGGGAACTGCAAAAGGCTTGGCTTATCTCCATGAGGGGTTGGAACCCAAAGTTGTTCATCGCGATATTAAATCGAGCAACATTTTGATTGACAAGCAATGGAATTCAAAGGTGTCCGACTTTGGACTTGCTAAACTCCTTGACTCTGATAGCAACTACATTAAAACTCGTGTAATGGGTACATTCGGATATGTGGCTCCTGAATATGCAAGTACCGGCATGTTGAATGAACAAAGCGATGTGTATAGTTTTGGAATTCTTATAATGGAAGTAATTACAGGTCGGAATCCAGTTGATTATAGTCGGCCACCGGAGGAGGTGAATTTAGTTGACTGGCTAAAGAAGATGGTTAGTAACAGAAATGCAGAGGGAGTGTTGGATCCGAAACTCCCTGAGAAACCGAATACAAGGGCACTAAAAAGAGCACTTATTGTAGCATTGCGCTGCACAGACTCAAATGCACAAAAGCGGCCTAAAATGGGACGCATTGTACACATGCTTGAAGATGAAGAATCCCCTTACAAAGAGGATCATAGAGCTAGAAGGGAATCAAGATACTCACCCAAGAATAAAGTAAACGACAATCCGAAAGAGGAGGCAACTGTTTCCAGTGAGGATTGTAGAACTGAAAGTGGGATGCAGGTCAATGAGACAAGATGA 1563 0.4792 MPDDHSTPPTMNDQLSKQTSIFGLRLCVVGGICVGAAIVLILVLISLWLASKLSTTNKRNRHTIPDVPKEIQEIEIDRHPSSSPSSASKPVPGNGHGLQPESEPDRLPPPTEGEESNNNNAVLGIKRIQFEIGKNHRISYPEQRALVTSSSQSNKGSGGEALEHNNQQGATVIPEVSHLGWGHWYTLRELELATNFFANENVIGEGGYGIVYHGIFNDNTHVAIKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPLSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILIDKQWNSKVSDFGLAKLLDSDSNYIKTRVMGTFGYVAPEYASTGMLNEQSDVYSFGILIMEVITGRNPVDYSRPPEEVNLVDWLKKMVSNRNAEGVLDPKLPEKPNTRALKRALIVALRCTDSNAQKRPKMGRIVHMLEDEESPYKEDHRARRESRYSPKNKVNDNPKEEATVSSEDCRTESGMQVNETR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181312g00009 520 FunFam Probable serine/threonine-protein kinase At1g01540 177 272 - -
Stsc181312g00009 520 PANTHER OS01G0323000 PROTEIN 10 491 - -
Stsc181312g00009 520 SMART serkin_6 197 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181312g00009 520 MobiDBLite consensus disorder prediction 78 92 - -
Stsc181312g00009 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Stsc181312g00009 520 CDD STKc_IRAK 203 469 - -
Stsc181312g00009 520 MobiDBLite consensus disorder prediction 62 77 - -
Stsc181312g00009 520 Gene3D Phosphorylase Kinase; domain 1 163 272 - -
Stsc181312g00009 520 ProSitePatterns Protein kinases ATP-binding region signature. 203 225 IPR017441 GO:0005524
Stsc181312g00009 520 MobiDBLite consensus disorder prediction 463 520 - -
Stsc181312g00009 520 ProSiteProfiles Protein kinase domain profile. 197 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181312g00009 520 Gene3D Transferase(Phosphotransferase) domain 1 273 487 - -
Stsc181312g00009 520 FunFam Putative receptor-like serine/threonine-protein kinase 273 483 - -
Stsc181312g00009 520 SUPERFAMILY Protein kinase-like (PK-like) 181 474 IPR011009 -
Stsc181312g00009 520 Pfam Protein kinase domain 199 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181312g00009 520 MobiDBLite consensus disorder prediction 59 120 - -
Stsc181312g00009 520 MobiDBLite consensus disorder prediction 463 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181312g00009 Stsc-Chr181312 42260 45545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181312g00009 123 514 Trihelix Transcription Factor Family AT1G70460 39.655 2.87e-87 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc181312g00009 Pkinase 5.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181312g00009 - - gmx:100797440 718.383