Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181311g00023 ATGGAAAGGAAGGTAGGAAAAGTTAAAAAAACAATGAAAGAAGATAATTTGCAGCGGCGATGGTCCCTCAAAGACTTTGAGATCGGAAAACCTCTTGGTAGAGGAAAGTTCGGCAGAGTCTACGTCGCCAGAGAAGTCAAGAGCAAATATGTAGTTGCATTGAAGATTATATTCAAGGAACAAATTGAGAAGTACAGACTTAATCATCAACTAGGGAGGGAGATGGAAATACAATCCAACCTTCAACACCCGAACATTCTACGACTATATGGGTGGTTTCATGATGCAGAGCGTGTTTTCTTGATTCTTGAATATGCTCACAATGGTGAGCTCTACAAGGAGCTTAGAAAAAGAGGCCACCTTACTGAGATGCAAGCAGCCACGTATATTTTGAGTCTCACAAAGGCATTGGCATATTGTCATGAGAAGCATGTTATTCATAGGGATATCAAACCAGAAAATCTGTTGCTTGACCATGAGGTATTGTTCTCCTTTTACACCTTCTTGGTTCTTAACTTCTTATGCAAACTATGTGGATACTAA 543 0.3978 MERKVGKVKKTMKEDNLQRRWSLKDFEIGKPLGRGKFGRVYVAREVKSKYVVALKIIFKEQIEKYRLNHQLGREMEIQSNLQHPNILRLYGWFHDAERVFLILEYAHNGELYKELRKRGHLTEMQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEVLFSFYTFLVLNFLCKLCGY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181311g00023 180 SMART serkin_6 26 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181311g00023 180 SUPERFAMILY Protein kinase-like (PK-like) 17 161 IPR011009 -
Stsc181311g00023 180 Gene3D Phosphorylase Kinase; domain 1 13 107 - -
Stsc181311g00023 180 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 12 161 IPR030616 GO:0004672
Stsc181311g00023 180 Gene3D Transferase(Phosphotransferase) domain 1 108 177 - -
Stsc181311g00023 180 ProSitePatterns Protein kinases ATP-binding region signature. 32 59 IPR017441 GO:0005524
Stsc181311g00023 180 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Stsc181311g00023 180 FunFam Aurora kinase A 18 109 - -
Stsc181311g00023 180 ProSiteProfiles Protein kinase domain profile. 26 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181311g00023 180 Pfam Protein kinase domain 26 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181311g00023 Stsc-Chr181311 138222 143650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181311g00023 11 159 CBL-interacting serine-threonine protein kinases AT5G25110 39.597 2.78e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Stsc181311g00023 Pkinase 7.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181311g00023 K08850 - gmx:100800111 270.781