Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181311g00003 ATGGGAATATATCTAAGCACTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGACCGTCTTAGATATGGTTTATCTTCCATGCAAGGCTGGCGTGCTACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGCTTCCACTTCATTTTTTGGTGTCTACGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCAAAGTTTCTTCACCAACAGGTGCTCAGAAGTGAAGAATATGCAGCTGGAGATATAGGAACCTCTCTTCAGAAAGCATTTTTAAGAATGGATGACATGATGCGTGGTCAAAGGGGATGGAGGGAGTTATCAGTCCTGGGCGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGCTGATTTGGTCTCCAAAAGGTACTGATGGTAGCGACCAAGTTGACGATTGGGCTTTTGAGGAGGGACCTCATGCTGATTTTGCTGGCCCAACTTCAGGAAGCACTGCCTGTGTTGCTGTTATTCGAAACAACCAACTTTTTGTTGCAAATGCTGGTGATTCTCGTTGTGTAATTTCTCGAAAGGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGAACTTGAGATTGAAAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCACGCGGGACGAGTTAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAGCAGAATAAATTTCTTCCTGCTGAAAAACAAATTGTAACTGCCAATCCAGATATAAACACTGTTGACCTTTGTGAAGATGATGAATTCATGGTCCTGGCTTGTGATGGCATATGGGATTGCATGTCAAGCCAACAGTTGGTAGATTTTATTCATGAACAATTGCGCTCAGAAACCAAGCTTTCTGTAGTGTGTGAAAGAGTACTCGATCGGTGTTTGGCTCCGTCAACAGCCGGTGGCGAGGGATGCGACAACATGACCATGATCTTGGTGCAGTTCAAGAAGCCAGCTCAATCAAGTGCACCACCAGAAGAGCAGCAATCCTCTGCAAACGAAAAAGCTGAAGAAGCTGAAGAACCAAAAGTGGATAGTAGTGAAAGTTAG 1092 0.4277 MGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYTDLDASTSFFGVYDGHGGKVVAKFCAKFLHQQVLRSEEYAAGDIGTSLQKAFLRMDDMMRGQRGWRELSVLGDKINKFTGMIEGLIWSPKGTDGSDQVDDWAFEEGPHADFAGPTSGSTACVAVIRNNQLFVANAGDSRCVISRKGQAYNLSRDHKPELEIEKERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINTVDLCEDDEFMVLACDGIWDCMSSQQLVDFIHEQLRSETKLSVVCERVLDRCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPPEEQQSSANEKAEEAEEPKVDSSES 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181311g00003 363 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Stsc181311g00003 363 PANTHER PROTEIN PHOSPHATASE 2C 18 328 IPR015655 GO:0004722|GO:0006470
Stsc181311g00003 363 MobiDBLite consensus disorder prediction 330 363 - -
Stsc181311g00003 363 CDD PP2Cc 23 329 IPR001932 -
Stsc181311g00003 363 SMART PP2C_4 13 327 IPR001932 -
Stsc181311g00003 363 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Stsc181311g00003 363 SMART PP2C_SIG_2 28 329 IPR001932 -
Stsc181311g00003 363 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Stsc181311g00003 363 Gene3D - 1 330 IPR036457 -
Stsc181311g00003 363 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Stsc181311g00003 363 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Stsc181311g00003 363 MobiDBLite consensus disorder prediction 345 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181311g00003 Stsc-Chr181311 26193 30992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181311g00003 1 343 PP2C-type Phosphatase Gene Family AT2G25070 78.134 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181311g00003 K17499 - qsa:O6P43_015776 640.958