Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181310g00009 ATGGCGGGTGGGAGACTCTTCACCTCTGCCTTCTCCAACACCAATAACAACAACACTCTTCTGCTTCATCAGAACCAATCTTCCGAGCCTCTTCTTGATCCTCCTCCTCCTCCTCTCTTTCTTTCTTCATCACTTCCTTTTCTCGGTTCTCGATCCATGGTGAGCTTCGAAGATGTTCAAGGAGGGAAGGGGAGTAACAATGGATCGTTCTTCCGACCATACGATCCGACGGAGGAGAGCGCGGAGGAGGGGATGGAGGAGTACCTGATGCAGCCGGCGGAGAAGAAGCGGCGGCTATCGACGGAGCAAGTAGAGTTTCTGGAGAAGAGCTTCGAGGAAGAGAACAAGCTGGAGCCGGAGAGGAAGACGAAGCTGGCGAAGGAGCTAGGGCTGCAGGCGAGGCAGGTGGCGATATGGTTCCAGAACCGTCGTGCACGGTGGAAGACGAAGCAGCTTGAGAAGGATTACGATTCGCTTCAGGCTACGTTTGAAAGCCTTAAAGCCAACCATGATAACCTGCTCAAGGAGAAAGATCGCTTGAAAGCTGAGGTAGCAAGCCTAACGGAGAAGGTGCTTGCGAGGGAGAAACAAGGAGTGAATCCCAACCAATCCGAAGGCAAGAGTAGTGATGAAACAAACGGAATGCAGGAGCCAGCAGCATGGGAGAAGCCTATAGCTACGGTGGATTCAGTTTCATCAGAAGGCGAAGGGTCTAAGGTTTCAGTGAAGAGTGATATGTTGGATTCTGATGATAACAGCCTCTATTATCATCACTCTTCAGCCTCCTATGTCTTCGAACCTGATCAATCGGATCTCTCACAAGACGAGGAAGACAATCTTATAAGCCGGAGCTTCTTGCATCCCTACATATTCCCTAAACTTGAGAATGTCGAATACTCCGACCCGCCGGAGACTTCATGTACTTTTGGATTCGACCATGAAGATCATCATGCCATTTGGTCATGGTCTTATTGA 975 0.5005 MAGGRLFTSAFSNTNNNNTLLLHQNQSSEPLLDPPPPPLFLSSSLPFLGSRSMVSFEDVQGGKGSNNGSFFRPYDPTEESAEEGMEEYLMQPAEKKRRLSTEQVEFLEKSFEEENKLEPERKTKLAKELGLQARQVAIWFQNRRARWKTKQLEKDYDSLQATFESLKANHDNLLKEKDRLKAEVASLTEKVLAREKQGVNPNQSEGKSSDETNGMQEPAAWEKPIATVDSVSSEGEGSKVSVKSDMLDSDDNSLYYHHSSASYVFEPDQSDLSQDEEDNLISRSFLHPYIFPKLENVEYSDPPETSCTFGFDHEDHHAIWSWSY 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181310g00009 324 MobiDBLite consensus disorder prediction 192 244 - -
Stsc181310g00009 324 Pfam Homeobox associated leucine zipper 150 191 IPR003106 GO:0006355|GO:0043565
Stsc181310g00009 324 Coils Coil 142 197 - -
Stsc181310g00009 324 Gene3D - 145 194 - -
Stsc181310g00009 324 MobiDBLite consensus disorder prediction 197 215 - -
Stsc181310g00009 324 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Stsc181310g00009 324 Pfam Homeodomain 95 148 IPR001356 GO:0003677
Stsc181310g00009 324 CDD homeodomain 95 151 IPR001356 GO:0003677
Stsc181310g00009 324 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
Stsc181310g00009 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 81 229 IPR045224 GO:0003700
Stsc181310g00009 324 PRINTS Lambda-repressor HTH signature 121 130 IPR000047 GO:0003677
Stsc181310g00009 324 PRINTS Lambda-repressor HTH signature 130 146 IPR000047 GO:0003677
Stsc181310g00009 324 SMART HOX_1 93 154 IPR001356 GO:0003677
Stsc181310g00009 324 SUPERFAMILY Homeodomain-like 85 152 IPR009057 -
Stsc181310g00009 324 Gene3D - 98 144 - -
Stsc181310g00009 324 FunFam homeobox-leucine zipper protein ATHB-6-like 98 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181310g00009 Stsc-Chr181310 63858 66147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181310g00009 39 322 Homeobox Transcription Factor Family AT3G01470 38.144 1.38e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc181310g00009 Homeodomain 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181310g00009 - - gmx:732618 331.643