Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181310g00004 ATGGAAGCTAAACATCTTATATTGGTGTTGTTATGTGTGTTCCCTACCTTAAATGCTAATATAGGTGAATTTGACAAAATATGGCTGAAGCGATCTATAGAAGCCAAGAAAAATGCTCACAATGCTTTCAAGAAAAACCCTGAGGCAGTTACTGCTGATTTCAATCAACATGTTACCAAGTATAAAGGTTCCAAATCCAATAAAACGAGTCCCTCTGGGGACATGACCGAAAAAAAATCCAATAAAACGAGAAGGGGTTTATCCAACAAATACAAAGGTCCATGTGTGACCACAAATCCCATTGACCATTGCTGGAGATGTGACTCCAATTGGGAGAAAAACCGCCAACGCTTAGCAGACTGTGCTATTGGTTTTGGCCACGGCACGACGGGCGGCAAGGGTGGCCAAATCTACGTAGTTACTGATCCCTCAGATCATGATCTCCTCAACCCAAAACCGGGGACTCTTCGGTTCGCCGTGATTCAGAAGGAGCCACTGTGGATCATCTTTAAACATGACATGACCATCAAGCTTAGCAGCGAGCTTCTCGTCACCAGCGACAAGACCATAGATGCGCGCGGTGCCCATGTTCACATTGCCGGTGGTGCCCAAATTACTATACAGTTTGTGAAGAACATAATTGTTCATGGACTGCATATTCATGACATCAAGAAACATGCCGGCGGCATGATCAGAGACTCAGTAGATCACTATGGAATCCGCACGGAGAGCGACGGTGATGGGCTTTCGTTGTTTGGAGCTACTAATATTTGGATTGATCATGTTTCTCTGTCAAATTGTGATGATGGACTTATTGATGCCGTTGCTGGATCAACAGCTATTACCATCTCTAACTGCCACATGACTCGCCATAATGATGTTATGTTACTTGGTGCAAGTGATGCCTTCTCAGGAGATCAAATCATGCAAGTAACATTGGCATTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGCCAACATCCCACCATCGTCAGCCAGGGCAACCGATTTATCGCACCTCCAAACCCAGCTGCAAAAGAGGTGACCAAAAGGGATTATGCTCCTGAAAGTGTGTGGAAAAATTGGAATTGGAGATCAGAGGGAGACTTAATGATGAACGGAGCATTCTTTGTTGAGTCTGGGAAACAGGTTACAAATTTTCCCAAGTCAGGAGGTATTTCTGCAAAGCCTGGGAGTTTCACATCAAGTCTCACTCGCTTTGCAGGTCCTCTCAAATGTGCAGTAAACAAGCCATGCTAA 1269 0.4476 MEAKHLILVLLCVFPTLNANIGEFDKIWLKRSIEAKKNAHNAFKKNPEAVTADFNQHVTKYKGSKSNKTSPSGDMTEKKSNKTRRGLSNKYKGPCVTTNPIDHCWRCDSNWEKNRQRLADCAIGFGHGTTGGKGGQIYVVTDPSDHDLLNPKPGTLRFAVIQKEPLWIIFKHDMTIKLSSELLVTSDKTIDARGAHVHIAGGAQITIQFVKNIIVHGLHIHDIKKHAGGMIRDSVDHYGIRTESDGDGLSLFGATNIWIDHVSLSNCDDGLIDAVAGSTAITISNCHMTRHNDVMLLGASDAFSGDQIMQVTLAFNHFGQGLVQRMPSQHPTIVSQGNRFIAPPNPAAKEVTKRDYAPESVWKNWNWRSEGDLMMNGAFFVESGKQVTNFPKSGGISAKPGSFTSSLTRFAGPLKCAVNKPC 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181310g00004 422 MobiDBLite consensus disorder prediction 60 89 - -
Stsc181310g00004 422 Pfam Pectate lyase 184 329 IPR002022 -
Stsc181310g00004 422 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Stsc181310g00004 422 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Stsc181310g00004 422 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Stsc181310g00004 422 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Stsc181310g00004 422 PANTHER PECTATE LYASE 18-RELATED 35 328 IPR045032 GO:0030570
Stsc181310g00004 422 SMART amb_all 173 346 IPR002022 -
Stsc181310g00004 422 SUPERFAMILY Pectin lyase-like 99 413 IPR011050 -
Stsc181310g00004 422 MobiDBLite consensus disorder prediction 60 74 - -
Stsc181310g00004 422 Pfam Pectate lyase, N terminus 20 87 IPR007524 GO:0030570
Stsc181310g00004 422 Gene3D - 98 415 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181310g00004 Stsc-Chr181310 31767 33823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181310g00004 6 422 Polysaccharide Lyase AT5G15110 50.538 4.25e-165 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181310g00004 K01728 - gmx:100801864 577.015