Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181309g00019 ATGATCTCTGCAGATTCTTGTGCTGAGAATTTTGCTGCTTCCATGAACGGATTCATATATGAGAATGCTCCTATCTCTGTGTTCTCCAATAGTAATAATAATCACAACCCTGGAAATGTGTTCAAGTTTGAAGATTCATCTTCAAACCATTCAGAATCTCCTCCTACTAGTGATGATCCTGGTGGCACAAATAATGGAGAATCACACACAGAGAGTACTAAACACTCAAACCCTATTCTCAGATACATAACTGAAATTCTCATGGATGAGGAAGATGATTTACAGCAAAAGCCCTGTATGTTACATGATTGTTTGAAGCTTCAGGCTGCTGAGAAAGGCTTCTATGATGCCCTCGGCCGCAGCTACCCTTCGTCGCCCTCAAAGATCCATGGTGATTTTAGAGATGATTGCCATGACCCTGATGATAGTAATTTTGGTAGAACAACTAGCTCTGATAGCAATAGTAGCAGCTACAACACTAGTGAAAATTCATGTGAGTCTGATTGGTTCAATGGATGGGGGGATTTTGAGTCCAAATTCCTTCAAAACTCTCTGATTGATTCCCCAGAAATAAAGAACTCCTATGAAGTTTTAGGGTTAGGTAATGTTCAAATTAGGGATTCACATGGTTCTGGCTATTTTCAAAATGGAACCTTGAACAACATAATTCCAGATATTCTGCCACCAATTACTGGAGGAGGTAGTAGTAGATCAAGGGAAAAGAGAAGCCATCATATGGATGATGTCACACAAGAAGGGGAGAGAGGAAACAAGCTCTCAGCTGTGTATGCCGATGAGTCGGAGCCATTGGACATGTTTGATGCAGTGCTGCTTTGTCAGGATGGCAAGAGTCCTGCCATATTTTGCGGCGACAGCGAATCGTTGCCGGTTGTGGCCAATTCCGGTGGATCTAATGTGAAGACAAGCCGTTCAAAGAAAGGAGGCAACAAGGGTGGAGCTACCAACAAAGGGGGAACCATAAGTACAACAGTTGATTTATGGAGTCTCCTAACTCAGTGTGCACAAGCTGTGGCAAGCTATGATCAGAGGAGTGCTAATGAGATACTCAAGCAGATTAGGCAGAACTCTCCTGATTCTGGCGATGGGCTGCAGCGTTTGGCTAAGTACTTCGCCGATGGCCTTGAGTCAAGGTTAGCTGCCGGGACACCCAAGTATATCCTCCTTCAGTCATTATCTGCTGCAGATATGCTAAAGGCATACAAAGTGTACATCACGGCCATCCCATTTCAAAGGATGTCAAATTTCATGGCTAATAGGACTATTCTGAAGCTAGCAGAGAATGAGAAAAGTCTTCACATTATTGATTTTGGCATTTTCTATGGTTTTCAGTGGCCTTGTCTCATTCAGCGCCTCTCAGAAAGACCCGGAGGGCCTCCAAGGCTTCGGATCACTGGAATTGATCTTCCTCAGCCTGGATTCAGGCCTACAGAAAGGGTTGAGGAGACAGGGCGACGATTGAAAAACTATTGCAAGAGGTTTGGGGTCCCATTTGAGTACAATTGCCTTGCACAGAAGTGGGAAACCATACAACTAGAAGATCTCAAAATCGATAGGAATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGCGAACTGTCCAAGGGATGCTGTATTAAGGTTGATCAGGAGGATAAATCCAAACATCTTTATCCATGGTGTGGTCAATGGCACTTACAATGCCCCGTTTTTCCTGACTCGGTTCAGGGAGGCACTCTTCCACTTCTCGGCGTCGTTTGA 1818 0.4219 MISADSCAENFAASMNGFIYENAPISVFSNSNNNHNPGNVFKFEDSSSNHSESPPTSDDPGGTNNGESHTESTKHSNPILRYITEILMDEEDDLQQKPCMLHDCLKLQAAEKGFYDALGRSYPSSPSKIHGDFRDDCHDPDDSNFGRTTSSDSNSSSYNTSENSCESDWFNGWGDFESKFLQNSLIDSPEIKNSYEVLGLGNVQIRDSHGSGYFQNGTLNNIIPDILPPITGGGSSRSREKRSHHMDDVTQEGERGNKLSAVYADESEPLDMFDAVLLCQDGKSPAIFCGDSESLPVVANSGGSNVKTSRSKKGGNKGGATNKGGTISTTVDLWSLLTQCAQAVASYDQRSANEILKQIRQNSPDSGDGLQRLAKYFADGLESRLAAGTPKYILLQSLSAADMLKAYKVYITAIPFQRMSNFMANRTILKLAENEKSLHIIDFGIFYGFQWPCLIQRLSERPGGPPRLRITGIDLPQPGFRPTERVEETGRRLKNYCKRFGVPFEYNCLAQKWETIQLEDLKIDRNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGELSKGCCIKVDQEDKSKHLYPWCGQWHLQCPVFPDSVQGGTLPLLGVV 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181309g00019 605 MobiDBLite consensus disorder prediction 29 77 - -
Stsc181309g00019 605 MobiDBLite consensus disorder prediction 300 323 - -
Stsc181309g00019 605 MobiDBLite consensus disorder prediction 146 161 - -
Stsc181309g00019 605 ProSiteProfiles GRAS family profile. 324 605 IPR005202 -
Stsc181309g00019 605 MobiDBLite consensus disorder prediction 237 254 - -
Stsc181309g00019 605 Pfam GRAS domain family 335 528 IPR005202 -
Stsc181309g00019 605 MobiDBLite consensus disorder prediction 125 161 - -
Stsc181309g00019 605 MobiDBLite consensus disorder prediction 225 257 - -
Stsc181309g00019 605 Coils Coil 518 527 - -
Stsc181309g00019 605 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 244 523 IPR005202 -
Stsc181309g00019 605 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181309g00019 Stsc-Chr181309 99605 102248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181309g00019 76 527 GRAS Transcription Factor Family AT2G29060 40.129 4.20e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc181309g00019 GRAS 1.5e-57 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181309g00019 - - gmx:100815586 612.453