Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181309g00017 ATGAAGCCTTTGAAAATGGATCCTAATTTCAACTCCAGTTTCATCAATGGATTTGGATTCAGCCAAGTTCCCATTATTCCCAATGTAGAGGAACAGTGGCCTGATCCTGTAAATGGGTTGGAATCCATGAATTATGGATTCATGAATGGCCCTTTTCTTCTTCCACCTCATCCAAACAATGCTCCAAATCCTACTTATTCCATGTCCACCATTACTACTGCAGATGAAGATTCTCCCTTGGATGATACTGATTTCTCTGCAACTGTGCTACGGTACATAAACCAGATGCTTATGGAAGAGGACATGGAGGAGAAGCCTTGTATGTTCCATGATTCATTGGCTTTACAAGCTGCTGAGAAATCATTGTATGATGCCATTGGTGGGACTTCCCTTCCTCCTCCTCCTCCTTCCATACAGCATCATGTTCAAAACTACCACAATGTTGAAAGCCCAAATGATAGCCTCTCTAGTAATTTCAGTGGTTATAGCAGCGTTGGCACCACTAGTACCAGCAACTCGGTTGAGTCACATTGGAGCAACTATGACCCTTCGGAGTATAAGCCTTCTATACTGCAAACCCCCCTTCCTGCTGACTTTGTTTTTCAGGCCAGTTCGATCCCCAGAACACAGTATTCCGTGAGCAATAGGAGTAGCTTTACTATAGCCAACAATGGTGGTGGATTGTTGGGGAGTTCAGGTGCTGGATTTTTGGATTCTGAGTTTCTCAGCAAGAGTGAGTCCATGCTGCAGTTTGAGAGGGGAATGGAGGAAGCCAGTAAGTTTCTTCCTAAGGGGAATCCGTTGATTATTGACTTGGAGAATAGCACCTTTAACCCTTCTTTTCAAAAGGCTCCTCAGCAGGTGGCAGTTAAGGAGGAGAGAGATGAAAGGGAGTATTTTTCTGGTGAGTCAAAAGGAAGAAAGAATCACGAGCGGGAAGACCAATTGGAATTACAAGATGGGAGGAGCAACAAACAGTCTGCAATTTACAGGGATGACAGTGAGCTATCAGAATTGTTTGATAAAATACTGTTGGGCACAGGGTGTGGAAAAGAGGCACCTCCCAGGTGCATTCTTGACGATGGCAAACCTAATGGACAAGATAAGAACGTGCAGCAAAAGGAAGAAACAAACAAGTCTAGCAGCGGAAAGAATCGAGCTAAGAAACAAGGTAATAAGAAAGGAGTTGTTGATCTGAGGACACTATTGGTTCTATGTGCACAAGCTGTTTCATCTGATGATCGTTCAACTGCTAATGAATTATTGAAGCAGATTAGACAGCACTCTTTACGTCTAGGTGATGGGTCTCAGAGGCTGGCACATTGCTTTGCAAATGCCCTTGAAGCACGCTTGGCCGGCTCTGGCACCCAGCTATATACTTCTCTGACCTCCAAAAGAAAATCTGCTGCAGATATGGTGAAAGCATACCAAATGTATATATCAGCCTGCCCATTCAAGAAGCTTGCTATCATTTTTGCAAACCATACAATTCTGAACCTAGCCAAGCCCAAGGAAGTGGAAACTCTTCACATTATTGATTTTGGTATCCGTTATGGCTTCCAGTGGCCTGGCCTTATATTTCGTCTATCAAGAAGACCTGGTGGTCCTCCCAAGCTTCGCATAACAGGGATAGAGCTCCCACAACCAGGTTTCAGGCCAGCAGAGAGAGTCCAGGAAACAGGGCGTCGCCTAGCTAAGTATTGTGAACGCTTTGATGTTCCTTTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAATTGAGGACCTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATTGTATGGTTCGGTTTAAGAATCTACTTGATGAGACTGTTGTGTTGAATAGTCCCAGGGACGCTGTCTTGAAATTAATCAGGAAGGCGAATCCTAATATATTTCTACATGCTACTGTCAATGGGAACTACAATGCCCCATTCTTTGTGACTCGGTTCCGGGAGGCTCTTTTTCATTACTCTACATTGTTTGACGTGCTCGACACCAATGTGGACCGTGAAGATCCAATGAGGTTGATGTTTGAGGAGGAATTCTTGGCCAGGGAGGTAGTGAATATTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGCGACCTGAAACATACAAGCAATGGCAGGTTCGGAATACAAGAGCAGGGTTTAGGCAACTCCCCTTGGATAACCACCTCATTCACAAACTAAGATGTAAACTGAAAGATACATACCATAGTGATTTCATGCTTGATGTGGATGGCAACTACATGCTGCAAGGTTGGAAGGGCCGAATCATTTATGCTTCCTCTTGTTGGGTACCAGCATAG 2325 0.4404 MKPLKMDPNFNSSFINGFGFSQVPIIPNVEEQWPDPVNGLESMNYGFMNGPFLLPPHPNNAPNPTYSMSTITTADEDSPLDDTDFSATVLRYINQMLMEEDMEEKPCMFHDSLALQAAEKSLYDAIGGTSLPPPPPSIQHHVQNYHNVESPNDSLSSNFSGYSSVGTTSTSNSVESHWSNYDPSEYKPSILQTPLPADFVFQASSIPRTQYSVSNRSSFTIANNGGGLLGSSGAGFLDSEFLSKSESMLQFERGMEEASKFLPKGNPLIIDLENSTFNPSFQKAPQQVAVKEERDEREYFSGESKGRKNHEREDQLELQDGRSNKQSAIYRDDSELSELFDKILLGTGCGKEAPPRCILDDGKPNGQDKNVQQKEETNKSSSGKNRAKKQGNKKGVVDLRTLLVLCAQAVSSDDRSTANELLKQIRQHSLRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKPKEVETLHIIDFGIRYGFQWPGLIFRLSRRPGGPPKLRITGIELPQPGFRPAERVQETGRRLAKYCERFDVPFEFNAIAQKWETIKIEDLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFLHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFLAREVVNIIACEGSERVERPETYKQWQVRNTRAGFRQLPLDNHLIHKLRCKLKDTYHSDFMLDVDGNYMLQGWKGRIIYASSCWVPA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181309g00017 774 Pfam GRAS domain family 399 771 IPR005202 -
Stsc181309g00017 774 MobiDBLite consensus disorder prediction 288 330 - -
Stsc181309g00017 774 MobiDBLite consensus disorder prediction 354 392 - -
Stsc181309g00017 774 MobiDBLite consensus disorder prediction 367 383 - -
Stsc181309g00017 774 ProSiteProfiles GRAS family profile. 390 772 IPR005202 -
Stsc181309g00017 774 MobiDBLite consensus disorder prediction 280 330 - -
Stsc181309g00017 774 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 323 765 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181309g00017 Stsc-Chr181309 84901 87613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181309g00017 89 774 GRAS Transcription Factor Family AT1G07530 55.857 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc181309g00017 GRAS 9.8e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181309g00017 - - ahf:112736647 1382.08