Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181309g00009 ATGGATGAAGATGTGGACAATACAAGATTCTACTCTCTTCCCTCCAATCTTGGCCTATTGCACCGCAGGCAACAAGTTTCTCAGGCCATGGGAATTTGTTTGAGCAACCAAATTAAAGCTGAGACACCATTTAACCCTGGGTTAAGTTCAAAGAATGTTGGTACCAATGGAAATGATCTCAGCAACCAAAATAGTAAGGTTTCGACGCCTCCGAATCCGCGAAGTGAGGGTGAGATCTTGCAGTCATCAAATCTAAAGAGCTTTACTCTGATGGAACTTAAGGCCGCAACACGAAATTTTCGCCCTGACAGCGTCTTGGGAGAAGGTGGATTCGGGTCAGTATTTAAGGGATGGATTGATGAGCAGTCATTTGCAGCTGCTAAACCTGGCACTGGCATTGTAATTGCTGTGAAGAAGCTTAATCAGGAAGGTTTCCAAGGTCACAAGGAGTGGTTGGCTGAGGTAAACTATCTAGGCCAGCTTTCTCATCCTCATCTGGTGAAATTGATTGGGTATTGCCTTGAAGATGAACACCGCCTTCTGGTCTACGAATTCATGCCTCGTGGCAGCTTGGAGAATCATTTGTTCAGGAGGGGCTCATATTTTCAACCTCTTTCGTGGTGCCTTCGCTTGAAGGTCGCTCTCGGTGCTGCAAAAGGCCTTGCATTTCTTCACAGTGCTGAAACAAAAGATTATAATGCAAAACTTTCTGATTTCGGTTTGGCGAAGGATGGCCCTACCGGCGACAAAAGTCATGTCTCCACAAGGGTAATGGGAACCTATGGATATGCAGCTCCTGAGTATCTAGCAACTGGTCATCTCACTGCTAAGAGTGATGTCTTTAGTTTTGGAGTTGTCCTATTGGAAATGTTATCTGGCCGGAGGGCTTTTGACAAGAACCGTCCTTCAGGGCAGCACAACTTGGTTGAATGGGCTAAGCCATACCTCGCCAACAAGCGAAAGGTTCACCGAGTGATGGATAACCGTCTAGAAGGTCAATACTCGCCGGATGAAGCCTTTAAGGTAGCTGTCCTTGCACTAAGATGCCTAGCACCAGAGTTCAAGTTGAGGCCAAGCATGGATGAAGTTGTTGCCAGTTTGGAGAAGCTTCAGATTGTGAATGTAACTCAGAACCGTCCTGGCAATGGCCATAGAGCTCGCAGAAAAAGCGCCGATGATGCTAGGCCTGGGAGAATTGGCACAGCATATCCCCGGCCATCTGCTACCGCAGCTACCACACTCTGCACTTGA 1251 0.4724 MDEDVDNTRFYSLPSNLGLLHRRQQVSQAMGICLSNQIKAETPFNPGLSSKNVGTNGNDLSNQNSKVSTPPNPRSEGEILQSSNLKSFTLMELKAATRNFRPDSVLGEGGFGSVFKGWIDEQSFAAAKPGTGIVIAVKKLNQEGFQGHKEWLAEVNYLGQLSHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWCLRLKVALGAAKGLAFLHSAETKDYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVFSFGVVLLEMLSGRRAFDKNRPSGQHNLVEWAKPYLANKRKVHRVMDNRLEGQYSPDEAFKVAVLALRCLAPEFKLRPSMDEVVASLEKLQIVNVTQNRPGNGHRARRKSADDARPGRIGTAYPRPSATAATTLCT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181309g00009 416 MobiDBLite consensus disorder prediction 375 416 - -
Stsc181309g00009 416 ProSitePatterns Protein kinases ATP-binding region signature. 106 139 IPR017441 GO:0005524
Stsc181309g00009 416 Gene3D Transferase(Phosphotransferase) domain 1 186 385 - -
Stsc181309g00009 416 ProSiteProfiles Protein kinase domain profile. 100 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181309g00009 416 FunFam Serine/threonine-protein kinase BIK1 67 185 - -
Stsc181309g00009 416 SUPERFAMILY Protein kinase-like (PK-like) 65 367 IPR011009 -
Stsc181309g00009 416 PANTHER OS01G0588500 PROTEIN-RELATED 62 371 - -
Stsc181309g00009 416 MobiDBLite consensus disorder prediction 44 78 - -
Stsc181309g00009 416 Gene3D Phosphorylase Kinase; domain 1 75 185 - -
Stsc181309g00009 416 Pfam Protein tyrosine and serine/threonine kinase 104 367 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181309g00009 Stsc-Chr181309 38688 41863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181309g00009 46 367 Glycoside Hydrolase AT3G07070 44.413 4.10e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc181309g00009 PK_Tyr_Ser-Thr 4.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181309g00009 - - qsa:O6P43_028227 601.282