Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181309g00002 ATGGAGCTCTTGCACCCTCTTCCTCCTCACCACCACCACGACTCCCCACTCGCACCAGAACCCCTCCACCGTTACTCTCCTCCCCCCTCCACCACCTCGCGCGTTCAGTTCCACGCGCTGGCTTCTCATCCTGACGCTTCTCTAGAGGAGAAGGTGCACGTGGCAGTTGGCAAGTCGGTGGGAAAAGGTGCCACTTTGCTTCAATGGGCTTTCTCAAACTTCACCAACCCACACATTCTTTTGCTTCATGTTCATCAACCTTCTCCTTTCATCCCTACACTATTAGGGAAGTTACCAGCATCTCAGGCTACTCCTGAAGTGGTTTCTGATTTTAGAAGAGCCGAAAAAGAACAGGCCATGAGGCTTTTGGACAATTACTTGAGAATTTGCCGTGCAGCTAAGGTTAAGGCAACCATTATGATGACCGAAGCTGATCAAGTCCAGAAGGGGATTGTTGATTTGGTTGTCGAGCATAACATTAGGAGGCTTGTTATTGGAGCAATACCCGAAGGTTGGATGAAAGTCAAAAGGAATTCCAGTAAAGCAAATTATGCTGCCAAAAATGCACCCCCGTTCTGTAAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAATACCTTGTTCTTTATCTCCATGTGAAATGATTGAAACCGAAGGCACTTTTGCATCTGAATCATCTACATCTACTAGTCGATCTCCCAAAAATTCTGCTGAGAGTCCTTCAGATACTCATTTAGAGGCTGAGGAAGAAAGAGTTAATGGTGAACTTGTTGAAGTCAAACAAGAATCTGATGAAGCAGCAGATGAGGCTTTTGTTGAGCTACTGAAGTTGGAAGCCGAAGCCACTGATGCCATAAGGAAGGTCAAGTTGTTTGAATCTGCTCATGCACACGAAGTAAAGCTCAGACAAGAGGCAGAGGATGAGTTGAGAACTACAGTAAAGGAGCAACAAATGCTGTTGGATGAGAAGGAAGAAATTGGTAGTGAGCTACAAAGAACCATGAGAAGTATTGCCATCCTAAACAGTTGTGCACAGGAAACAGACCGTAGGCAAGATGTAGCTGAAGATGAGCTATCGCTAATTCAAGCATCCATCTCCACACTGTGGCATGAAAAACAGCAGATCAGGCGACAGAAAATGGAAGCCATCCGCTGGCTGGATCGGTGGAAAAGCCGTGGACAAGTTGGAGCTGCTCATTGTAATGGAGTCGTAGGGTTTGCTGAGGAGTTACCTGAGATAGCAGAATTTTCATTATTGGATATTCAAAATGCCACATGCAATTTTTCTGAAAGCTTCAAAATTAAGGAGGGTGGATATGGTGCTATTTATAAGGGAGAAATGTTGGGCAGGACAGTTGCTATAAGAAAGCTCCATCCTCACAACTTGCAAGCACCTTCACAGTTTCACCAAGAGGTTCAAGTTCTTGGTAGTTTTCAGCACCCTCATCTGTTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTTGTATATGAGTACTTGCCCAATGGAAATATTCAAGACTTCCTTCTAAGAAAGGGCAACGTTTTCCCTTTAACATGGAATATCCGAGCACGATGGATTGCTGAAATTGCTAGTGCTGTCTGCTTTTTACATTCTTCCAAACCTGAAACTATTATTCATGGTGATCTGAATCTTGACATAGTACTTCTTGATTCCGCACTTAGTTGCAAGATTTGTGAATTTGGGTTCAGCAGACTGGCGACAGAAGATTCTCTCTATCTTCCTAGTTTCGGCATGGAAACTGAGCCAAGGGGTTCTTTCACATATACAGATCCAGAGTTTCAGAGAACTGGAAAACTAACACCAAAGTCCGACATATACTCCTTTGGCCTCATTATTTTGCAACTCTTGACTGGTCGCACTCCTGTTGGATTAGTTGGTGAAGTACAAAGAGCCGTTACACGGGGACGATTGTCCTCAATTTTAGACTCTTCGGTTGGTGAATGGCCTTTGGCTGTGGCAACACGATTGGCTGACCTTGGATTACAGTGCTGCCAACAATATAGTAGAGACAGACCAGAGTTAACACCCTCTCTGGTAAGAGAACTGGAGCAGTTACATGTTTCGGAAGAGCGACCTGTGCCATCATTTTTCCTGTGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGATTCACTTATGAAAGGGATGCCATAACTGAATGGCTGGAAAATGGGCATGATACTTCTCCCATGACCAATCTGAAACTGAGTCACCTGTATCTTACTCCCAATCATGCACTTCGACTCGCTATCCAAGAATGGCTTTGCAAACCTTGA 2340 0.444 MELLHPLPPHHHHDSPLAPEPLHRYSPPPSTTSRVQFHALASHPDASLEEKVHVAVGKSVGKGATLLQWAFSNFTNPHILLLHVHQPSPFIPTLLGKLPASQATPEVVSDFRRAEKEQAMRLLDNYLRICRAAKVKATIMMTEADQVQKGIVDLVVEHNIRRLVIGAIPEGWMKVKRNSSKANYAAKNAPPFCKIWFIYKGKHIWTREASEIPCSLSPCEMIETEGTFASESSTSTSRSPKNSAESPSDTHLEAEEERVNGELVEVKQESDEAADEAFVELLKLEAEATDAIRKVKLFESAHAHEVKLRQEAEDELRTTVKEQQMLLDEKEEIGSELQRTMRSIAILNSCAQETDRRQDVAEDELSLIQASISTLWHEKQQIRRQKMEAIRWLDRWKSRGQVGAAHCNGVVGFAEELPEIAEFSLLDIQNATCNFSESFKIKEGGYGAIYKGEMLGRTVAIRKLHPHNLQAPSQFHQEVQVLGSFQHPHLLTLLGVCPEAWSLVYEYLPNGNIQDFLLRKGNVFPLTWNIRARWIAEIASAVCFLHSSKPETIIHGDLNLDIVLLDSALSCKICEFGFSRLATEDSLYLPSFGMETEPRGSFTYTDPEFQRTGKLTPKSDIYSFGLIILQLLTGRTPVGLVGEVQRAVTRGRLSSILDSSVGEWPLAVATRLADLGLQCCQQYSRDRPELTPSLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYERDAITEWLENGHDTSPMTNLKLSHLYLTPNHALRLAIQEWLCKP 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181309g00002 779 MobiDBLite consensus disorder prediction 226 247 - -
Stsc181309g00002 779 Pfam U-box domain 709 778 IPR003613 GO:0004842|GO:0016567
Stsc181309g00002 779 Gene3D Phosphorylase Kinase; domain 1 412 507 - -
Stsc181309g00002 779 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 64 188 - -
Stsc181309g00002 779 CDD RING-Ubox_WDSUB1-like 710 765 - -
Stsc181309g00002 779 MobiDBLite consensus disorder prediction 226 258 - -
Stsc181309g00002 779 ProSiteProfiles U-box domain profile. 708 779 IPR003613 GO:0004842|GO:0016567
Stsc181309g00002 779 PANTHER OS02G0152300 PROTEIN 52 774 - -
Stsc181309g00002 779 ProSiteProfiles Protein kinase domain profile. 435 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181309g00002 779 CDD STK_N 51 201 - -
Stsc181309g00002 779 Pfam Protein tyrosine and serine/threonine kinase 440 691 IPR001245 GO:0004672|GO:0006468
Stsc181309g00002 779 SMART Ubox_2 712 775 IPR003613 GO:0004842|GO:0016567
Stsc181309g00002 779 MobiDBLite consensus disorder prediction 1 19 - -
Stsc181309g00002 779 SUPERFAMILY Protein kinase-like (PK-like) 419 691 IPR011009 -
Stsc181309g00002 779 Coils Coil 309 329 - -
Stsc181309g00002 779 Coils Coil 252 276 - -
Stsc181309g00002 779 MobiDBLite consensus disorder prediction 1 32 - -
Stsc181309g00002 779 Gene3D Transferase(Phosphotransferase) domain 1 508 708 - -
Stsc181309g00002 779 Gene3D HUPs 46 190 IPR014729 -
Stsc181309g00002 779 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 709 778 IPR013083 -
Stsc181309g00002 779 SUPERFAMILY RING/U-box 706 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181309g00002 Stsc-Chr181309 5236 9945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181309g00002 48 776 U-box Gene Family AT2G45910 37.781 1.67e-166 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc181309g00002 PK_Tyr_Ser-Thr 3.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181309g00002 - - aip:107629106 1147.11