Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181309g00001 ATGATCGGTATGGAAGCTGCTGGAATCCATGAAACCACATACAATTCAATCATGAAGTGTGATGTGGATATTAGGAAGGACTTGTATGGTAACATTGTTCTCAGTGGTGGAACTACCATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAAATCTCTGCTTTGGCTCCAAGCAGCATGAAGATCAAGGTTGTTGCTCCTCCTGAGAGGAAATACTCTGTCTGGATTGGTGGTTCCATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAAGCTGGTCCTTCAATTGTGCATAGGAAATGCTTCTAA 333 0.4354 MIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDEAGPSIVHRKCF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181309g00001 110 Gene3D - 1 71 - -
Stsc181309g00001 110 ProSitePatterns Actins signature 2. 91 99 IPR004001 -
Stsc181309g00001 110 FunFam Major actin 2 73 - -
Stsc181309g00001 110 SUPERFAMILY Actin-like ATPase domain 2 110 IPR043129 -
Stsc181309g00001 110 FunFam Putative actin-related protein 5 74 102 - -
Stsc181309g00001 110 Gene3D - 72 108 - -
Stsc181309g00001 110 Pfam Actin 5 110 IPR004000 -
Stsc181309g00001 110 PANTHER ACTIN 1 103 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181309g00001 Stsc-Chr181309 3383 3994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181309g00001 1 110 Cytoskeleton Gene Families AT3G12110 96.364 9.03e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181309g00001 K10355 - gmx:100811630 222.246