Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181308g00002 ATGTCCTTCGGGAGTATAGTTCGCGATGTAAGGGATGGATTTGGAAGCTTATCGAGGCGGAGTTTTGATTTAAGGCTTCCTGGACATCAAAGGGGCAAGTCGCGTAGCTCTGTCCACGAGTTGCATGATCAGCCTCCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCGCCCGAGCTTCTTCGCGATGTTATTAAGAGGTTGGAAGCTAGCGAGAGCACCTGGCCCAGTCGTAAGCATGTGGTTGCTTGTGCAGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAATACTGTGGGAAGATTACTTTCCCTCTTTCCCTGAAGCAGCCTGGGCATAGGGATGGACCAATCCAGTGTTTCATCAAGAGAGACAAGACTAAGCTGACATACCATCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGCAAGTTTCTTCTAGCTGCGAAACGAACCAGAAGGACGACTTGCACTGAGTATGTTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAACTCAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCACCAGGCCGGAGCCGCAGGTTTAATTCGAAAAAGGTGTCTCCTAAGCTCCCTAGTGGCAGCTACAATATCGCTCAGGTCAACTATGAGTTGAATGTCCTTGGTACTAGGGGGCCAAGAAGGATGCATTGCACCATGTATTCAATCCCCACATCATGCCTTCAGCCTGGTGGCTCCGTTCCTGGCCAGCCAGAGCTCCTTCCCCCCTCCCTCGAGGATTCATTCCGGAGTATCTCCTTCTCGAAGTCAATTCGTCATTCAACTGAGTTTAGCAGCTCCAGATTCTCAGACATAATGGGCGACGGTGGCAATGAGGATGTGGAGGGAAAGGAGAGACCACTAGTCCTTAAGAATAAGCCTCCAAGATGGCATGAGCAACTGCAGTGTTGGTGCCTTAACTTCAGGGGAAGGGTGACCGTCGCCTCGGTCAAGAATTTCCAGCTGATTGCTGCAAATGCACAGCCTGCAGCTCCTCCTCCTCCTGCTGCTGCTGCTGCTGCAGGAACAGGAGCAACAACATCTCAGCCGTCGCAGTCTGACCCGGACAAGATCATTCTTCAGTTTGGTAAGGTTGGGAAGGATATGTTCACAATGGATTACCGTTACCCTCTATCAGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 1314 0.4871 MSFGSIVRDVRDGFGSLSRRSFDLRLPGHQRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPSRKHVVACAAVCKSWREMCKEIVSSPEYCGKITFPLSLKQPGHRDGPIQCFIKRDKTKLTYHLFLCLSPALLVENGKFLLAAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKLPSGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPTSCLQPGGSVPGQPELLPPSLEDSFRSISFSKSIRHSTEFSSSRFSDIMGDGGNEDVEGKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANAQPAAPPPPAAAAAAGTGATTSQPSQSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181308g00002 437 Pfam F-box domain 53 100 IPR001810 GO:0005515
Stsc181308g00002 437 PANTHER TUBBY-RELATED 45 435 - -
Stsc181308g00002 437 SUPERFAMILY Tubby C-terminal domain-like 102 437 IPR025659 -
Stsc181308g00002 437 MobiDBLite consensus disorder prediction 370 395 - -
Stsc181308g00002 437 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Stsc181308g00002 437 Gene3D Tubby Protein; Chain A 111 437 IPR025659 -
Stsc181308g00002 437 ProSitePatterns Tub family signature 2. 422 437 IPR018066 -
Stsc181308g00002 437 Pfam Tub family 114 432 IPR000007 -
Stsc181308g00002 437 MobiDBLite consensus disorder prediction 381 395 - -
Stsc181308g00002 437 FunFam Tubby-like F-box protein 110 437 - -
Stsc181308g00002 437 CDD F-box_AtTLP-like 53 97 - -
Stsc181308g00002 437 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Stsc181308g00002 437 FunFam Tubby-like F-box protein 48 101 - -
Stsc181308g00002 437 Gene3D - 48 101 - -
Stsc181308g00002 437 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Stsc181308g00002 437 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Stsc181308g00002 437 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Stsc181308g00002 437 PRINTS Tubby superfamily signature 394 413 IPR000007 -
Stsc181308g00002 437 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Stsc181308g00002 437 PRINTS Tubby superfamily signature 415 437 IPR000007 -
Stsc181308g00002 437 PRINTS Tubby superfamily signature 169 185 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181308g00002 Stsc-Chr181308 22082 25230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181308g00002 1 437 TUB Transcription Factor Family AT1G76900 69.365 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc181308g00002 Tub 1.9e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181308g00002 K19600 - gmx:100817532 751.895