Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181307g00016 ATGAAGTTTCTAGGATCATGTCTGAAGAGCATGGATACCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATCTGTACAAGTATTACAAGAAGACAAAGGAAGGAAAAGCNNNNNNNNNNACTCGAAGCCTTATACGGTGAAAACAACAGTAACAACACCAATGCTGCCACTGCCTCCGCTCAAGAAACCAATTTCGGTGGCAGCACCAACGCCCTCCATTACCAAACCAGCACCCATGCTTTCAATTCCCAAATCAACCAAGAAATGCTGCTTCTTGGTTCCCAGAACAGCCTAAGCCTCACAAACTCCACTGAGTTTGAGACCTCTTCTTCTGATGATGATGATCACAATAGCACTGGGGGAGTCAAGGAGAAGAACGATGAGTCCATGGACAAGCGGAGGAAGAGAGCAGCAGGGACCAAGAGCTGGAAGGTGAAGATAAAAGACTTCATCGACTTGCAAATGAGGAAGCTTGTGCAGAAGCAAGAAGAGTGGCTTGACAAGCTTATGAAGACGCTGGAGCAGAAGGAGAAAGAGAGGGTTCTCAGAGAAGAAGAGTGGAGGAGGCAAGAGGCGGCCAGGTTGGAGAGGGAGCACAAGTTTTGGGCAAAAGAGAGATCATGGATTGAGGCAAGAGATGCTGCTTTAATGGAGGCCTTGCACAAGCTCACAGGAACTACTACTACTGATCAGGTAAAGCCTCATCATCATCATGATGGGATAATAATGCAAAATGAGGAGCATAACAACGAAGATGGTGAGAACTGGCAAGAATGTGAGATATCAAGGCTTGTTCAGTTGAGAGCTGAGATAATGGAAACAAGGTTTAGGCAAGGCGGCGGCGGCGGCGGTGGTTGTTCAGAAGAGGGTTTGTGGGAAGAGATAGCAACAAAAATGGCATGTTTTGGGTATGAAAGGAGTTCAACAAAGTTGAAAGAGAAATGGGAAACAATCAGCAAAGGAATCAACAACAAGAAGAAGCGAAAGGAGAATAACCCAAACTCATCAGTAGTAAGAAGTAGCAGTTCTTGTTTTTACATTGAAAACAATAGCAACAACAATGACCATTATTCTTCGTCTTCTTCCCTATATAACAACCATGGATACTGTGATATCAACAATGATCAAAGGCGGCAACAGCAATCATCACCTTCGAATTCCAACGCCAATGCATCAGTTCAACAAGCTGAGAACTGTTTCCCATTCTTGATGGGTTGTGAAGGAGGAACTTTGTGGGACAACTACAGCTTAAAGGTTAATAAACCAAACCAAAATCATCAGTAG 1290 0.4395 MKFLGSCLKSMDTKGVGKSAGRSLRICTSITRRQRKEKXXXXLEALYGENNSNNTNAATASAQETNFGGSTNALHYQTSTHAFNSQINQEMLLLGSQNSLSLTNSTEFETSSSDDDDHNSTGGVKEKNDESMDKRRKRAAGTKSWKVKIKDFIDLQMRKLVQKQEEWLDKLMKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERSWIEARDAALMEALHKLTGTTTTDQVKPHHHHDGIIMQNEEHNNEDGENWQECEISRLVQLRAEIMETRFRQGGGGGGGCSEEGLWEEIATKMACFGYERSSTKLKEKWETISKGINNKKKRKENNPNSSVVRSSSSCFYIENNSNNNDHYSSSSSLYNNHGYCDINNDQRRQQQSSPSNSNANASVQQAENCFPFLMGCEGGTLWDNYSLKVNKPNQNHQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181307g00016 429 Coils Coil 161 188 - -
Stsc181307g00016 429 Pfam Myb/SANT-like DNA-binding domain 256 338 IPR044822 -
Stsc181307g00016 429 Gene3D - 258 324 - -
Stsc181307g00016 429 FunFam Trihelix transcription factor GT-2 258 326 - -
Stsc181307g00016 429 PANTHER FI21293P1 38 393 - -
Stsc181307g00016 429 MobiDBLite consensus disorder prediction 370 393 - -
Stsc181307g00016 429 MobiDBLite consensus disorder prediction 47 72 - -
Stsc181307g00016 429 MobiDBLite consensus disorder prediction 43 72 - -
Stsc181307g00016 429 CDD GT1 256 323 - -
Stsc181307g00016 429 MobiDBLite consensus disorder prediction 111 139 - -
Stsc181307g00016 429 MobiDBLite consensus disorder prediction 104 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181307g00016 Stsc-Chr181307 133786 136657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181307g00016 43 423 Trihelix Transcription Factor Family AT5G03680 36.643 2.95e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc181307g00016 Myb_DNA-bind_4 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181307g00016 - - aip:110263365 509.99