Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181307g00014 ATGAACACATGTTCTTCTGGTTCAACTGAGACCGGTCGGCACCCTCTGTACCGAGGAGTGAGGCGCAGGAGCAGTGGCAAATGGGTGTCTGAAATAAGGGAGCCCAAGAAACCAACAAGGATTTGGCTTGGAACCTTCCCCACTCCTGAAATGGCTGCTATTGCTTATGATGTCGCCGCTCTTGCTCTAAAGGGTAGCGCTGCAATCCTTAACTTCCCGGACTCCGCTTCTTCCCTCCCTGTCCCTGCCTCTTCCTCTCCCCGCGATATTCAACTGGCCGCTGCCAGTGCAGCTGCTGCTCTGGCCGCCGCCAATGACGCCCTACAGCAGGGAAACCGAGACCGGGAGGCCTCCAATGGCGTTGCGGCGGAGCAAGAGGTGGTGTTCCCCCAATCCTGGAACACTAATAATGAGTTTGTGGATGAGGATTTGATTTTTGATATGCCTAATGTTCTGTTGAATATGGCTGAGGGAATGCTTCTTAGCCCTCCTCGTTTTCACGTTGCCGATGACTACACCACCGCTCCCGAATACTCGCCGGAAGATCCACACCTCTGGAGTTACCCTTATTTCCCATGA 579 0.5389 MNTCSSGSTETGRHPLYRGVRRRSSGKWVSEIREPKKPTRIWLGTFPTPEMAAIAYDVAALALKGSAAILNFPDSASSLPVPASSSPRDIQLAAASAAAALAAANDALQQGNRDREASNGVAAEQEVVFPQSWNTNNEFVDEDLIFDMPNVLLNMAEGMLLSPPRFHVADDYTTAPEYSPEDPHLWSYPYFP 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181307g00014 192 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Stsc181307g00014 192 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Stsc181307g00014 192 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Stsc181307g00014 192 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Stsc181307g00014 192 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Stsc181307g00014 192 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Stsc181307g00014 192 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700|GO:0006355
Stsc181307g00014 192 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Stsc181307g00014 192 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Stsc181307g00014 192 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 188 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181307g00014 Stsc-Chr181307 113686 114344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181307g00014 12 189 AP2-EREBP Transcription Factor Family AT2G36450 65.556 4.40e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc181307g00014 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181307g00014 - - gmx:100799620 219.935