Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181307g00005 ATGGACTTCCATTATCTGAAGCAATGGAGAAACCAGGATGAGTCAGAGGAACAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCACCAGAATCTCATCAACAGCAGCACCCATCACCACCTGCCTCTGCTCTCCCCTTGTTTGTACCTGAACCCAACAGCAAAGTCACCTGCACCCTGTCAGATTCAACACTTCCTCCTCATACTACTACTTCTACTACTATCTCCAAATTCCCCAGAATGGGGAGTTACTTCAGCTTGTCACAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCCGGTGCAGCTGTTCCTCCTGAGCTCCTTCAACCAATCAAGAAAAGCCTCTTCCATTCGTCACCCTATTTCCTCCATCACTCTCTCCAACACTATCAACCTGCAGCTCTGTTGCAATCAGGGTATTGGGGGAGAGCATCAATGGATCCGGAGCCAGGGCGGTGCCGGAGGACTGACGGGAAGAAGTGGCGGTGCTCGAGGGACGTGGTGGCGGGTCAGAAGTACTGCGAGCGCCACATGCATAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACCACTGGTGCTGGAGGCGTTGCTTCTTCATCTTCTTGTATCTCTTCACCGCCTCTTGCCACTGCCTCAATCAAATCCCCTTTTGATCTCCTTCACCTTAATAGTGAACGGTCCTCTGGGAGTGGAGGGACCAAGGAAGAAGAAAACAAGAGGGTGTTTGAAAATCAAGATAACCATCATCATGTGGGTGGGGATGGTGGCAGATCAGGTGGTCACATGCTGAGGCATTTCTTTGATGACTGGCCACGCTCACTGCAGCAGGACCCTGAAAACACTGAAAGCAATGGTGGTGGTGGTGGTGGGAGTGGGAGGCTGAACTCGGCCACATCACTCTCTATTTCTATGCCTGGAAATAATGCTGTGTCATCTTCGGATGTATCACTGAAATTGTCTACTGGGTATGGGGAGGATCCGTGTCCAAGAAATGGGAATGGTGGGGGTGCGGAGGCAGAGCAACTGCAGTTGAGTTGGGGCGGAAGCTGGAGTTCGGCGAATCAAGTGGCTTCAATGGGAGGACCACTTGCTGAGGCACTCAGATCATCCACTACCACATCATCTCCCACCAGCGTTCTGCATCACTTGCCTCGTGCTTCTGCCTCTCAGACCACCTTCATTAGCACCTAG 1227 0.5126 MDFHYLKQWRNQDESEEQQQHSTKMPKLLPPESHQQQHPSPPASALPLFVPEPNSKVTCTLSDSTLPPHTTTSTTISKFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLFHSSPYFLHHSLQHYQPAALLQSGYWGRASMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTTGAGGVASSSSCISSPPLATASIKSPFDLLHLNSERSSGSGGTKEEENKRVFENQDNHHHVGGDGGRSGGHMLRHFFDDWPRSLQQDPENTESNGGGGGGSGRLNSATSLSISMPGNNAVSSSDVSLKLSTGYGEDPCPRNGNGGGAEAEQLQLSWGGSWSSANQVASMGGPLAEALRSSTTTSSPTSVLHHLPRASASQTTFIST 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 255 284 - -
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 182 216 - -
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 1 21 - -
Stsc181307g00005 408 Pfam QLQ 86 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc181307g00005 408 PANTHER GROWTH-REGULATING FACTOR 5 37 323 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc181307g00005 408 ProSiteProfiles QLQ domain profile. 85 120 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc181307g00005 408 Pfam WRC 155 197 IPR014977 -
Stsc181307g00005 408 SMART QLQ_2 84 120 IPR014978 GO:0005524|GO:0005634|GO:0006355
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 1 48 - -
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 286 331 - -
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 255 350 - -
Stsc181307g00005 408 ProSiteProfiles WRC domain profile. 154 198 IPR014977 -
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 379 408 - -
Stsc181307g00005 408 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181307g00005 Stsc-Chr181307 46777 49618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181307g00005 1 395 GRF Transcription Factor Family AT3G52910 49.635 1.24e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Stsc181307g00005 WRC 2.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181307g00005 - - aip:107648821 672.544