Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181306g00008 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTATCTTGTGAAGAGGGACTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATCGATGCTCCGGGAGGATTTCTATTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCCTCGTATATCGAGACACAATTAATTAAGGCTAGGGAGCAACAACAGCAGCAACAACAGCCGCAGCCACAACCCCAGCAGTCACAACATCAACATCAGCAGCAGCAGCAGCAACAACAACAACACCACATGCAGATGCAACAGCTCCTGTTGCAGAGGCAGGCCCAGCAGCAGCAGCAACAACAACAACAGCAACAACAGCAGCAGCCTCAGCCACAGCCTCAGCAACAGCAGCCACAGCCGCAACAACAACAGCAACCACCCCAACAACAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTACAAATGGGCTGGTTGGGAACCCTGGCACTGCTAATGCAATGGCAACAAAGATGATCGAGGACAGGTTAAAACTGCCTCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTTGGAGACCAGCTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTCCTGGCCAGCCTTCTGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGGTCGTAGTCAGCAATTACCAGGGTCTACTCCGGACATCAAGAGTGAGATTAATCCTGTTTTAAATCCCAGAGCTGCGGGGCCTGAAGGATCACTAATAGGAATGCCTGGATCAAATCAAGGTAGCAACAATTTGACTTTGAAGGGGTGGCCACTCACTGGGTTGGAGCAATTAAGGTCTGGTCTACTTCAGCAGCAAAAACCTTTCATGCAAGCCCCACAGCCTTTTCATCAGCTTCCAATGTTGACACCCCAGCATCAGCAACATCTTATGTTACAAGCACAACAAAATCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTGATGAATAATAGGAACATGGGGCTAAGTAAGGATGGTCTTTCAAATCCGGTTGGGGATGTACCAAATGTGGGATCACCACTTCCAGGTGGCGGTCCCCCGTTTCCTCGTGGAGATACAGATATGTTAATGAAGTTGAGACTGGCTCAGTTACATCAGCAGCATCAGAATGCCAATCCCCAGCAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCCCAGAGTTCAAATCATAGCATGCATCAACAAGACAGAGTAGCGGGAGCTGGCAGTGTCCCTGCGGATGGTAGCATGTCAAACTCCTTCAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGACCTGCCAATAGTTCAGGAACAGCAAATACGGCGGGCCCGTCTCCAAGTTCAGCGCCCTCAACTCCCTCCACTCATACTCCTGGTGATGTGATGTCAATGCCTGCATTGCCTCATAGTAGTAGTTCAACAAAGCCTCTAATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCACCCTCAAACCAGTTGGCTGACGTGGATCGCTTTGTGGAGGATGGATCTCTTGATGACAATGTTGAATCTTTTTTATCCCATGATGATACAGATGCTAGAGATGCAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCTGTACGTGCAAGCACAAGCAAAGTCGTCTGTTGCCATTTCTCATCCGATGGGAAATTGCTTGCAAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAACTACTCTTGAAGAGCATTCGTCTTTAATCACTGATGTCCGTTTTAGCCCAAGCATGCCTCGCCTTGCAACATCTTCGTTTGACAAAACCGTCAGGGTTTGGGATGTTGATAATCCTGGGTATTCTCTTCGCACTTTTACCGGACATTCGACATCAGTTATGTCCCTAGATTTTCACCCGAATAAAGATGACCTTATCTGCTCTTGCGATGGTGATGGTGAGATACGATATTGGAGCATCAACAATGGCAGTTGTGCTAGAGTTGCAAAAGGTGGCACTGTGCAAATGAGATTTCAACCTCGATTGGGGAGGTACCTTGCTGCGGCTGCAGAGAATGTTGTATCTATACTTGATGTGGAGACACAAGCATGCCCATATTCATTAAAGGGACACACGAAGCCAATTCATTCCGTGTGTTGGGACCCATCTGGGGAGTTCCTTGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGACTCTTGGAACAGGAAGTGAAGGCGAATGTGTTCACGAGCTTAGCTGTAACGGCAATAAGTTCCACTCGTGTGTTTTCCATCCAACATATTCTTCACTACTTGTCATTGGTTGTTATCAGTCGTTGGAGCTGTGGAACATGACAGAGAACAAGACAATGACTCTGTCTGCTCACGAAGGTCTCGTCGCGGCGCTGGCAGTTTCAACCGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTATGTTAAGCTCTGGAAATAA 2688 0.4695 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQPQPQPQQSQHQHQQQQQQQQQHHMQMQQLLLQRQAQQQQQQQQQQQQQQPQPQPQQQQPQPQQQQQPPQQQQGRDRAHLLNGGTNGLVGNPGTANAMATKMIEDRLKLPLQRDSLDEAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGAAGAMSPQVQGRSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLPMLTPQHQQHLMLQAQQNLASPSASDDSRRLRMLMNNRNMGLSKDGLSNPVGDVPNVGSPLPGGGPPFPRGDTDMLMKLRLAQLHQQHQNANPQQQQQLQQHALSNQQSQSSNHSMHQQDRVAGAGSVPADGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSSSSTKPLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDARDAVGRCMDVSKGFTFSEVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVAKGGTVQMRFQPRLGRYLAAAAENVVSILDVETQACPYSLKGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHEGLVAALAVSTVNGLVASASHDKYVKLWK 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181306g00008 895 CDD WD40 607 895 - -
Stsc181306g00008 895 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 895 - -
Stsc181306g00008 895 MobiDBLite consensus disorder prediction 423 542 - -
Stsc181306g00008 895 Gene3D - 587 740 IPR015943 GO:0005515
Stsc181306g00008 895 Gene3D - 741 895 IPR015943 GO:0005515
Stsc181306g00008 895 MobiDBLite consensus disorder prediction 87 173 - -
Stsc181306g00008 895 ProSitePatterns Trp-Asp (WD) repeats signature. 672 686 IPR019775 -
Stsc181306g00008 895 MobiDBLite consensus disorder prediction 87 187 - -
Stsc181306g00008 895 MobiDBLite consensus disorder prediction 377 410 - -
Stsc181306g00008 895 Pfam WD domain, G-beta repeat 611 642 IPR001680 GO:0005515
Stsc181306g00008 895 Pfam WD domain, G-beta repeat 650 685 IPR001680 GO:0005515
Stsc181306g00008 895 Pfam WD domain, G-beta repeat 774 808 IPR001680 GO:0005515
Stsc181306g00008 895 Pfam WD domain, G-beta repeat 692 729 IPR001680 GO:0005515
Stsc181306g00008 895 Pfam WD domain, G-beta repeat 858 895 IPR001680 GO:0005515
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 863 895 - -
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 863 895 IPR001680 GO:0005515
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 652 IPR001680 GO:0005515
Stsc181306g00008 895 SMART WD40_4 815 854 IPR001680 GO:0005515
Stsc181306g00008 895 SMART WD40_4 646 685 IPR001680 GO:0005515
Stsc181306g00008 895 SMART WD40_4 856 895 IPR001680 GO:0005515
Stsc181306g00008 895 SMART WD40_4 604 643 IPR001680 GO:0005515
Stsc181306g00008 895 SMART WD40_4 689 729 IPR001680 GO:0005515
Stsc181306g00008 895 SMART WD40_4 771 809 IPR001680 GO:0005515
Stsc181306g00008 895 MobiDBLite consensus disorder prediction 467 526 - -
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 778 818 IPR001680 GO:0005515
Stsc181306g00008 895 Coils Coil 121 141 - -
Stsc181306g00008 895 FunFam Transcriptional corepressor LEUNIG 590 741 - -
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 738 IPR001680 GO:0005515
Stsc181306g00008 895 SMART Lish 8 40 IPR006594 GO:0005515
Stsc181306g00008 895 FunFam Transcriptional corepressor LEUNIG 742 895 - -
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 653 688 IPR001680 GO:0005515
Stsc181306g00008 895 MobiDBLite consensus disorder prediction 234 268 - -
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 734 - -
Stsc181306g00008 895 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Stsc181306g00008 895 Pfam LisH 10 36 IPR006594 GO:0005515
Stsc181306g00008 895 MobiDBLite consensus disorder prediction 423 457 - -
Stsc181306g00008 895 SUPERFAMILY WD40 repeat-like 605 895 IPR036322 GO:0005515
Stsc181306g00008 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 653 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181306g00008 Stsc-Chr181306 49325 60158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181306g00008 690 894 Miscellaneous Gene Families AT5G08390 25.238 2.22e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Stsc181306g00008 WD40 0.032 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181306g00008 - - aip:107605121 1354.35