Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181304g00002 ATGGCAAAGGCGTACACTTTGTTCCTTTCATTGTGTTTGGTTGTTGTGATACCAACCTTGCAAGCCAATATCTTAGAGAATAGCACCACATTTGTGGAGCAACATATTGGAACGGTTGATGATGCATATTGGAAGGAAAGGGCTTCAGTTGCAAGGAAGTTGAGCGAAAATGCATATTTTCCTGACCCGCACGCACTTACTAGAAACTTCACTCTCACGGTTCAACAAGACATAGCTGCCAGCAAGAAAGTAAGAAGAAGCTTGAGTGGTAAACAATTAGATGGACCATGTGAGGCAACCAATCCCATTGACAGATGCTGGAGATGTGACCCCAATTGGGAAAGCAACCGCCAAAAGCTTGCAGATTGTGTTCAAGGTTTTGGAAGGAAAACTACTGGAGGAAAGGGAGGTCCTATCTATGTAGTCACCGACCCTTCAGACCATGACATGGTTAACCCAAAACCAGGTACTCTTCGCCATGCAGTCACAAGAAATGGACCTCTGTGGATCACCTTTTCACATAGCATGTCTATTAGACTCAATGAAGAGCTGATGGTGTCTAGTAACAAGACTATTGATGGAAGAGGAGTTGATGTCTACATTATTAAGGGTGCAGGCATTACTGTCCAATACGTCAATAATGTGATCATCCATGGAATCAAGATTCGTGACATTGTCCCTGGTAACGGTGGATTTATTAGAGATTCTGAGGATCATTACGGGTTTAGGACACGCAGTGATGGTGATGGAATCTCTATCTTTGGCGCCAGTAATGTTTGGGTTGATCATGTTTCCATGAGAAAATGCTCAGATGGTATTATTGATGCCATTATGGGATCCACTGCCATTACCATCTCCAATAGTCATTTCACAGACCATAACGACGTGATGCTCTTTGGTGCCAATAAAGATCACACAATTGATAAGGTGATGCAAATCACGCTAGCATTCAACCACTTTGGTAAGAGATTGATTCAAAGGATGCCGAGGTGCAGATATGGATTTGTGCATGTTGTTAACAATGATTATACTCATTGGGAAATGTATGCCATTGGCGGTAGCGAACATCCTACTATTATTAGCGAAGGCAATCGCTTTGTAGCTCCCGATGACAACAATGCTAAAGAGATCACAAAGAGAGTAACCAATGACGACTGGAAAGACTGGCAATGGAGATCAACGGATGATGTGTTTGAGAATGGAGCGTTCTTCGTACAATCTGGACCAGAAATGAAAACCAGACCATTCGGACTAAAAGACATGATTACACCAAAGCCTGGTTCATATGTGCAAAGGCTTACTCGCTATGCTGGCTCCCTTAAGTGCAGAGTTGGTGAACCTTGCTAA 1347 0.4298 MAKAYTLFLSLCLVVVIPTLQANILENSTTFVEQHIGTVDDAYWKERASVARKLSENAYFPDPHALTRNFTLTVQQDIAASKKVRRSLSGKQLDGPCEATNPIDRCWRCDPNWESNRQKLADCVQGFGRKTTGGKGGPIYVVTDPSDHDMVNPKPGTLRHAVTRNGPLWITFSHSMSIRLNEELMVSSNKTIDGRGVDVYIIKGAGITVQYVNNVIIHGIKIRDIVPGNGGFIRDSEDHYGFRTRSDGDGISIFGASNVWVDHVSMRKCSDGIIDAIMGSTAITISNSHFTDHNDVMLFGANKDHTIDKVMQITLAFNHFGKRLIQRMPRCRYGFVHVVNNDYTHWEMYAIGGSEHPTIISEGNRFVAPDDNNAKEITKRVTNDDWKDWQWRSTDDVFENGAFFVQSGPEMKTRPFGLKDMITPKPGSYVQRLTRYAGSLKCRVGEPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181304g00002 448 SMART amb_all 175 372 IPR002022 -
Stsc181304g00002 448 Gene3D - 100 441 IPR012334 -
Stsc181304g00002 448 PANTHER PECTATE LYASE 18-RELATED 51 446 IPR045032 GO:0030570
Stsc181304g00002 448 Pfam Pectate lyase, N terminus 35 88 IPR007524 GO:0030570
Stsc181304g00002 448 Pfam Pectate lyase 183 366 IPR002022 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Stsc181304g00002 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Stsc181304g00002 448 SUPERFAMILY Pectin lyase-like 101 439 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181304g00002 Stsc-Chr181304 9098 11371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181304g00002 7 448 Polysaccharide Lyase AT1G14420 58.824 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181304g00002 K01728 - gmx:100798579 642.884