Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181303g00027 ATGGAGATAGAAGCAGCAACAAGTGGGAGTAGCAATAGTAGTGGGCTTGATAGAGGAAGCTACTTAGCTTGGGAAGATCTAAGAGTTGTTCTTCCAAATTTTGGAAAAGGACCAACTAAGAGGTTGCTTAATGGCCTCAATGGTTTTGCTGAACCTGGCAGGATCATGGCTATTATGGGCCCTTCTGGCTCTGGAAAATCCACTCTCCTTGATTCACTTGCAGGTAGGCTCTCAAAAAATGTGGTCATGACAGGAAATGTTGTTCTCAATGGGAAGAAGAAAAACCTAGGCTATGGTTTTGTTGCGTACGTAACACAAGAGGATGTGCTGCTTGGAACGCTAACAGTGAAAGAAACGATATCGTATTCAGCAAATCTGCGTCTTCCAACATCAATGACGAAAGAAGAAGTTGAAAGCATTGTTGAAGGAACGATCATAGAGATGGGGCTTCAAGACTGTGCTGACAGGTTGATCGGAAACTGGCACCTCAGAGGGATAAGCGGCGGGGAGAAGAAGAGGCTGAGCATTGCACTCGAGATACTGACAAGACCAAGCTTGCTATTTCTTGATGAACCCACCAGTGGACTCGACAGCGCCTCCGCCTTCTTCGTCGTTCAGACTCTCCGGAATGTGGCACGTGACGGCCGCACTGTTATCTCCTCCATTCACCAGCCTAGCAGCGAGGTCTTTGCTCTCTTTGATGACCTTTTCTTGCTCTCCGGCGGCGAAACCGTTTATTTTGGTGAAGCTAAAATGGCCGTTCAGTTTTTTGCTGAAGCCGGATTTCCTTGTCCACGTAAAAGGAATCCTTCTGATCACTTCCTAAGATGCATCAACTCCGACTTTGATGTTGTCACAGCTACACTCAAAGGATCTCAAAGAATTCATGATGTTCCAAATTCAGCAGATCCTTTCATGAATATGGCCACAGCACAAATTAAGTCTATGCTGGTTGACAGATACAAGCGCTCAACATATGCAAAAAGAGCAAAGGACAGGGTTCAAGAACTATCTACCAATGAAGGGCTTGAAAATGAGAGACAAACTGGAAGTCAAGCTACTTGGTGGAAGCAACTGTGCACATTGACAAAGAGATCATTTGTCAACATGTGTAGAGATGTTGGTTACTACTGGTTGAGGATCATAATCTATATCATTGTTTCAATTTGTGTTGGAACTATCTATTTTGATATTGGTTATAGCTATACCTCAATCCTAGCACGTGGTGCCTGTGGTGCATTCATCTCTGGCTTCATGACATTCATGTCCATTGGAGGCTTCCCATCCTTTATTGAAGAAATGAAGGTTTTCTATAAAGAAAGGCGTAATGGATATTATGGAGTTGCAGCATATATTCTAGGGAACTTCCTATCCTCTTTCCCTTTCTTGGTTGCAATTGCTCTAACTACAAGCACCATCACATACAACATGGTCAAATTCAGGCCAGGGATAGAACACTTTGTGTTCTTCGCTCTCAACATCTATGGTTGCATCTCTGTCATTGAGAGTCTCATGATGGTTGTAGCTTCACTTGTCCCAAACTTCCTAATGGGAATAATCACAGGAGCTGGAATAATTGGAATCATGATGATGACCTCTGGATTCTTCAGGTTGTTATCTGATCTTCCAAAGCCAGTTTGGCGCTACCCAATTTCATATATCAGTTATGGTGCTTGGGCAATTCAGGGGGCATACAAGAATGACTTGCTTGGGCTTGAGTTTGATCCTATGATACCTGGTGACCCAAAATTGACAGGAGAATTTGTGATAACAAAGATGTTGGGAATTGAATTAAACCATTCAAAATGGTGGGACTTAGGAGCACTACTATTGATCCTCATAGCCTATAGGCTTTTGTTCTTCACCATACTCAAGTTGAAGGAAAGAGCCTCTCCAATGTTTAAAGACCTTTATGCAAAGAGAACCTTGCATCAGCTTGAAAAGAGACCTTCATTCAGAAAAATGCCATCTTTCCCTTCCATGAGGCATCAACCACTCCACTCTTTGTCTTCTCAAGAGGGTCTTAATTCTCCACTCCATTAG 2043 0.4307 MEIEAATSGSSNSSGLDRGSYLAWEDLRVVLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDSLAGRLSKNVVMTGNVVLNGKKKNLGYGFVAYVTQEDVLLGTLTVKETISYSANLRLPTSMTKEEVESIVEGTIIEMGLQDCADRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAFFVVQTLRNVARDGRTVISSIHQPSSEVFALFDDLFLLSGGETVYFGEAKMAVQFFAEAGFPCPRKRNPSDHFLRCINSDFDVVTATLKGSQRIHDVPNSADPFMNMATAQIKSMLVDRYKRSTYAKRAKDRVQELSTNEGLENERQTGSQATWWKQLCTLTKRSFVNMCRDVGYYWLRIIIYIIVSICVGTIYFDIGYSYTSILARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERRNGYYGVAAYILGNFLSSFPFLVAIALTTSTITYNMVKFRPGIEHFVFFALNIYGCISVIESLMMVVASLVPNFLMGIITGAGIIGIMMMTSGFFRLLSDLPKPVWRYPISYISYGAWAIQGAYKNDLLGLEFDPMIPGDPKLTGEFVITKMLGIELNHSKWWDLGALLLILIAYRLLFFTILKLKERASPMFKDLYAKRTLHQLEKRPSFRKMPSFPSMRHQPLHSLSSQEGLNSPLH 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181303g00027 680 CDD ABCG_EPDR 19 248 - -
Stsc181303g00027 680 Pfam ABC-2 type transporter 358 567 IPR013525 GO:0016020|GO:0140359
Stsc181303g00027 680 Pfam ABC transporter 45 194 IPR003439 GO:0005524
Stsc181303g00027 680 Gene3D - 22 260 IPR027417 -
Stsc181303g00027 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 255 IPR027417 -
Stsc181303g00027 680 Pfam ABC-2 type transporter 223 279 IPR043926 GO:0140359
Stsc181303g00027 680 Coils Coil 680 680 - -
Stsc181303g00027 680 SMART AAA_5 52 223 IPR003593 GO:0016887
Stsc181303g00027 680 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524|GO:0016887
Stsc181303g00027 680 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 266 IPR003439 GO:0005524
Stsc181303g00027 680 MobiDBLite consensus disorder prediction 654 680 - -
Stsc181303g00027 680 MobiDBLite consensus disorder prediction 663 680 - -
Stsc181303g00027 680 FunFam ABC transporter G family member 11 16 260 - -
Stsc181303g00027 680 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 16 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181303g00027 Stsc-Chr181303 142333 149731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181303g00027 38 235 Calmodulin-binding Proteins AT2G36910 31.797 3.26e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181303g00027 K05681 - gmx:100807692 1195.65