Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181303g00008 ATGGAAGCTTTCAACAGCGACAAGAACAACAGCGTCGTTAGTAGCACCGGCGGTTTCTCGATTCCCAACGCGCCTCCGTCGGCGTTCACGTTCACGGCCTCTTCGGCTCCCTCCTCTACGCCTTCGGGCCTTTCGAGACCGCGATTGGTGAAGCTTCGTAAGCACAACAATGCCCCTGCTTTCACTCAATTTCGCGACACTACGGTTCCGGCTACGGCTACGGCGGCGCCGGCACCGTTTTCCTCCCCTAGATGTGGCTCATTTTCCTTTGGAGGTAACAGAAGCAAGAGCGGCGATTTTGGCGCGGGTTTCGAGAAAGGAATCAGTGATCAATTGATGAGTCTTAAGATTGGGAATGCGGCGAAGAAAGTTGAGGGCTTCGAGAAGGTTGGTTGTTCTTCGCCTTTTGTGGATGATAATTTTGTTTTGGAACAGATTAGCAAGTTGAATATTGATACGAACAGAGGTTTTGTTGAGTCGAAGCTGCAAAATGAGCTGAATGAGAAATTGAACATTGGAGGGGCGCAGAAGAGTGGTGATTCTTCTGCTGAGAATTCGGCTAATGCTGTTATTAACCAGATGAAGAATCTGGATGTGAAAGAAGATTCTCAATTTGGGAAAGGAACAGGGACAGAAGCGATTCTATTGAGGGAGATGGAGCATTTGAAACTTGTGAATGAGAGCAAGAACTCTAAACCAATGGAAGAAACTAGAGTGTCTCACAATGCTGCTTCATCAGCACCATCTGCTATGTTTGGTGGCTTTAATTTTCAGCCTGTTGGAGGTGGAGGTGGTGCCTTTGGAGCTACCAAGAGAGATGAATTTGAATTTGGCTTCACGGGGAAGCAAGAAACTTCAGGGTTGTCTTCAGTTGAGTTTAAAGCGCCTGCGGCGATGCCAAAGACTAGTATTTTTGGAGGTGCTGATGAGAAATTGAAGTCTAATGCAAAGAAGGGAAAAGGTGGGAACATGAAAACGAATAAAAGTAGAGCGAAATTGAATCAGTGTGCCTCCCCGGCCCAGCCGTGGGGTGGTCAAAGTTTTGTTCTGAGGGACAGTGTTCCCCAAGAGGACTCTCAGGGTTCTCCAAATGCTTATTCACCAATGGATGTGTCTCCATATCAGGAAAAACAGGTTGAAAACCAATGCTTAAGTGAAAATTCTGTGACATCCAACAGCGAGTCGTTTAGTGTCGATAGCAACTATATGGTCAATGATTCAGAACAAACATCGATTGATCCCATAGATGAAGATCTAATTGAGGCTACTGAGTGCTTGAATATTTATGGGGGAGAGGTTCCATGCAAGGAAACAAAGGAAGGAATTTCTAAGCATCCTATTCATGAAACTATTCGTGTTGAAGACAAACAGGATAGCTCTATTTCAGAGTTTGAAACTGAAAGCTTTAAGTCTGCTATTGATGAAGTAGGCATAGCCTACGATAGTAATAGAATGTTTCATCAAAGTCCTGTTTCTAGTCCACGAAACGTAATTGGGTCTTCCTTCACATTTGCTGCTGCTCCTTCAGCTGAAGTTCAATCATTGAGCCCAAAACGGCAACACAAAAAGAAACCTTGGCTAAATGTAGGCCATGATACTTACAACTATACTTCAAACATAAAAGTTCCTTATTCATCATCATCTGTGGCATTTTCTCCCCGTTCTACAACTTCATCACTTTTCACATCAGGCCCAGGTCTGAACACCAAAGTATCGTTGCCTCAACCCACAACAAAGGATTCTGAGTTGAATAAGGAGCAGGGGCTGAAGGAGACTTCTGTTCCTGCTTCTACTTCAGCCATTGCTGCCCAGGAAGCCTGTGAAAAGTGGCGGCTCAGAGGAAACCAAGCCTATAAAAATGGAGAGCTGGAAATGGCTGAGAACTTTTACAAAGAAGGAATTAGTTGTATTCCTAAAGAAGCAACACCCCGTGGCTGTCTTAGGGCTTTGCTGCTATGTTATAGCAACCTTGCTGCCACACATATGTCTCTTGGTAGGATGAGGGATGCACTAGAAGATTGTATGATGGCTGCCAAATTAGATCCAAATTTCCTCAAGGTGCAACTTAGAGCTGCAAATTGTTACCTTGCCCTTGGGGAAGTTGAAGACGCATCAAAATACTTCAAAAAGTGCTTGCAATCTGGAATTGATGTTTGCGTAGATAGAAAACTTGCTGTGGAAGCCTCCGAAGGCTTACAAAAGGCACAGAAAGTGTCAGATTTGATCAACCTTTCTGCTGAGCTTTTACAAAGAAGCACATCTTCTGACGCAGAAGGTGCACTGCAACACATTAACGAAGCACTGATGATAAGTTCACACTCCGAAAAATTGCTTGAAATGAAAGCAGAGGCTCTTTCAATGATGTGTAGATATGAGGAGGTGATTCAGCTTTGTGACGAGACCCTTGTTTCTGCTGAGAAGAATTCTTATCCATTTGATGCCAATACCCAAGTCACATATATGGATAATGCAGAACGCTCAAGAAGATTGTACTTCAGATTATGGCGGTGCTCAATGATGGTTAAAGCCTACTTTTACCTAGGAAAGCTTGAAGAAGGCCTTTCTTTCCTGGAGAAACAAGAGGAAAAGTTATCTGCCATAAGCAAGAGCGGAGGCAAGGTTTTGGAACCATTCATACCACTAGCTATAACTATACAAGAACTTTTGCGTCACAAGGTCGCAGGGAATGAAGCATTTCAGGCTGGAAGGCACACAGAAGCTGTTGAGCATTATACATCTGCTTTATCTTGCAATGTGGAGTCTCGTCCATTTGCTGCTGTCTGTTACTGTAATCGTGCTGCTGCATATAAAGCATTAGGTCAAATAACTGATGCTATTGCAGATTGCAGTCTAGCTATAGCACTCGATGGAAATTATTTGAAGGCACTTTCTAGACGTGCAACACTATATGAAATGATTAGGGATTATGACCAAGCAGCCAGTGACCTTTGGAGACTTGTCTCCCTCCTTAGTAAGGAAGTGGAGGATACCACCAATCAACTTGGGGTATCTGATCGGTCAGTTAGTATTACAAATGAGTTGAAAAAACATCGTATTCGGGTCAATGAAATAGAGGAAGAAGGAAGAAAGGAGGTCCCTCTTGATATGTACCTCATTTTGGGAGTTGAGCCATCTGCTTCATCATCTGAAATCAAGAAGGCCTATCGGAAAGCAGCACTTAGACATCATCCAGACAAGGCTGGCCAATCTTTGAGGGATGATGGGATATGGAAGGATATTGCTGAAGAAGTACATAGAGATGCGGATAGGCTTTTCAAAATAATTGGCGAGGCATACGCTGTCCTATCAGACCCCGCCAAGCGGGCACGATATGATGCGGAAGAAGAAATGAGGAATGCCCAAAAGAAACACCATGGAGCTATGCCTAGACCTAGTTCGGATACACAGTGTTACTCATTTGAACAAAGTGGCAGGAGTAGATCATGGAGAGAGGTTCGAAGATCATACGGTAATTCAGTTCCTCGAAATTTTGAACCTAGCCAACAAAGTAGGAAATAA 3519 0.4385 MEAFNSDKNNSVVSSTGGFSIPNAPPSAFTFTASSAPSSTPSGLSRPRLVKLRKHNNAPAFTQFRDTTVPATATAAPAPFSSPRCGSFSFGGNRSKSGDFGAGFEKGISDQLMSLKIGNAAKKVEGFEKVGCSSPFVDDNFVLEQISKLNIDTNRGFVESKLQNELNEKLNIGGAQKSGDSSAENSANAVINQMKNLDVKEDSQFGKGTGTEAILLREMEHLKLVNESKNSKPMEETRVSHNAASSAPSAMFGGFNFQPVGGGGGAFGATKRDEFEFGFTGKQETSGLSSVEFKAPAAMPKTSIFGGADEKLKSNAKKGKGGNMKTNKSRAKLNQCASPAQPWGGQSFVLRDSVPQEDSQGSPNAYSPMDVSPYQEKQVENQCLSENSVTSNSESFSVDSNYMVNDSEQTSIDPIDEDLIEATECLNIYGGEVPCKETKEGISKHPIHETIRVEDKQDSSISEFETESFKSAIDEVGIAYDSNRMFHQSPVSSPRNVIGSSFTFAAAPSAEVQSLSPKRQHKKKPWLNVGHDTYNYTSNIKVPYSSSSVAFSPRSTTSSLFTSGPGLNTKVSLPQPTTKDSELNKEQGLKETSVPASTSAIAAQEACEKWRLRGNQAYKNGELEMAENFYKEGISCIPKEATPRGCLRALLLCYSNLAATHMSLGRMRDALEDCMMAAKLDPNFLKVQLRAANCYLALGEVEDASKYFKKCLQSGIDVCVDRKLAVEASEGLQKAQKVSDLINLSAELLQRSTSSDAEGALQHINEALMISSHSEKLLEMKAEALSMMCRYEEVIQLCDETLVSAEKNSYPFDANTQVTYMDNAERSRRLYFRLWRCSMMVKAYFYLGKLEEGLSFLEKQEEKLSAISKSGGKVLEPFIPLAITIQELLRHKVAGNEAFQAGRHTEAVEHYTSALSCNVESRPFAAVCYCNRAAAYKALGQITDAIADCSLAIALDGNYLKALSRRATLYEMIRDYDQAASDLWRLVSLLSKEVEDTTNQLGVSDRSVSITNELKKHRIRVNEIEEEGRKEVPLDMYLILGVEPSASSSEIKKAYRKAALRHHPDKAGQSLRDDGIWKDIAEEVHRDADRLFKIIGEAYAVLSDPAKRARYDAEEEMRNAQKKHHGAMPRPSSDTQCYSFEQSGRSRSWREVRRSYGNSVPRNFEPSQQSRK 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181303g00008 1172 MobiDBLite consensus disorder prediction 1112 1129 - -
Stsc181303g00008 1172 SUPERFAMILY TPR-like 607 713 IPR011990 GO:0005515
Stsc181303g00008 1172 Gene3D Tetratricopeptide repeat domain 606 873 IPR011990 GO:0005515
Stsc181303g00008 1172 ProSiteProfiles dnaJ domain profile. 1035 1115 IPR001623 -
Stsc181303g00008 1172 MobiDBLite consensus disorder prediction 558 595 - -
Stsc181303g00008 1172 Gene3D DnaJ domain 1021 1133 IPR036869 -
Stsc181303g00008 1172 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 1162 - -
Stsc181303g00008 1172 SMART dnaj_3 1034 1107 IPR001623 -
Stsc181303g00008 1172 Coils Coil 1007 1027 - -
Stsc181303g00008 1172 SUPERFAMILY Chaperone J-domain 1002 1111 IPR036869 -
Stsc181303g00008 1172 Pfam DnaJ domain 1035 1112 IPR001623 -
Stsc181303g00008 1172 PRINTS DnaJ domain signature 1087 1107 IPR001623 -
Stsc181303g00008 1172 PRINTS DnaJ domain signature 1055 1070 IPR001623 -
Stsc181303g00008 1172 PRINTS DnaJ domain signature 1037 1055 IPR001623 -
Stsc181303g00008 1172 SMART tpr_5 888 921 IPR019734 GO:0005515
Stsc181303g00008 1172 SMART tpr_5 775 808 IPR019734 GO:0005515
Stsc181303g00008 1172 SMART tpr_5 607 640 IPR019734 GO:0005515
Stsc181303g00008 1172 SMART tpr_5 960 993 IPR019734 GO:0005515
Stsc181303g00008 1172 SMART tpr_5 926 959 IPR019734 GO:0005515
Stsc181303g00008 1172 SMART tpr_5 651 684 IPR019734 GO:0005515
Stsc181303g00008 1172 SMART tpr_5 685 718 IPR019734 GO:0005515
Stsc181303g00008 1172 MobiDBLite consensus disorder prediction 1112 1172 - -
Stsc181303g00008 1172 SUPERFAMILY TPR-like 891 989 IPR011990 GO:0005515
Stsc181303g00008 1172 Pfam Tetratricopeptide repeat 687 713 IPR019734 GO:0005515
Stsc181303g00008 1172 CDD DnaJ 1035 1104 IPR001623 -
Stsc181303g00008 1172 ProSitePatterns Nt-dnaJ domain signature. 1092 1111 IPR018253 -
Stsc181303g00008 1172 Gene3D Tetratricopeptide repeat domain 887 1005 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181303g00008 Stsc-Chr181303 29980 36771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181303g00008 1037 1113 C2H2 Transcription Factor Family AT1G74250 36.364 5.38e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181303g00008 K09527 - gmx:100790770 1228.77