Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181302g00008 ATGCCTGCCCTCGTTGATCTGCTCAAACCGATTCCAGATCGCCCAGGTGCCCCATTCTTAGCACTTGGGCTTTTGATTCAGCTTGCTAGAGATTGCCCATCAAATAAGGTTATAATGGTAGAGGCTGGGGCCTTAGAAGCACTTACAAAGTATCTTTCACTAAGTCCACAAGATGCAACTGAAGAAGCTGCCACAGATCTGCTAGGAATTCTGTTTAGCACTGCTGATATACGAAAACATGAGTCAGCATTTGGTGCTGTTGCTCAACTTGTCGCTGTCCTACGTCTAGGAGGAAGAGCTGCCAGGTTAAGTGCTGCAAAAGCATTGGAAAGTTTATTCATTGCTGATCACATTAGAAATGCAGAGATTGCTCGACAAGCTGTTCAACCATTGGTGGAGATTCTTAGTACTGGTTCAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTGGTTCGATTACTGAATGAAAACCCATCAAAGGCTCTTGCTGTTGCAGATGTTGAAATGAATGCAGTGGATGTTCTTTGCAGAATCCTTTCATCGGATTGTTCGGTGGAACTCAAGGGGGATGCTGCTGAATTATGTTGTGCACTTTTTGGAAATACAAGGATTCGATCCACAATGGCTGCTGCCCGCTGTGTTGAACCCCTAGTCTCTCTCCTTGTAACCGAGTTTAGTCCTGCTCAGCTTTCAGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAACTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGCCTACTTTATGGTCGGAACTATTTACTACATGAGGCCATTTCCAGAGCTCTTGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAGATGGAAATGGTGAAAGCTGGAGTGGTTGAAAGCATACTTAGCATCTTACACGAAGCACCTGATTATCTATGTGCAGCATTTGCAGAATTGTTGCGTATATTGACCAATAATGCTACCATAGCTAAAGGACAATCTGCTGCTAAAGTGGTTGAACCCTTGTTTTTGTCGCTGACAAGACAAGACTTTATGCCCGAAGGACTACATAGCACTTTGCAGGTTTTGGTTAATATCTTGGAACATCCACAGTGTCGTGCAGACCATACATTGAGTTCTCGCCAAGTTATTGAACCACTTATCCCCTTGCTTGATTCTCCAATACCAGCAGTGCAACAGCTGGCTGCTGAGCTTCTTTCACATCTACTTGTAGAAGAACACCTTCAGAAGGATCCAGTGACGCAGCAAGTAATTGGTCCCCTTATACGAGTTCTTAGTTCTGGTATACACATATTGCAGCAAAGAGCTGTAAAGGCTCTAGTTAGTATTGCTCTAACATGGCCAAATGAAATTGCCAAAGAGGGTGGTGTTGTTGAAATTTCCAAAGTAATATTGCAAGCTGATCCTTCCATTCCGCATGCCTTATGGGAGTCTTCTGCCTCGGTTTTGTCATGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCTATTGCTGTGTTGGTAAGGTTGCTGCGGTCTGGCTCAGAGAGCACAGTTATTGGTGCATTAAATGCTCTTCTGGTGTTGGAAAGTGATGATGGAACTAGTGCAGTAGCTATGGCTGAAAGTGGTGCCATAGAGGCACTCTTGGAGCTCCTAAGGTCTCATCAGTGTGAGGAAACTGCTGCTAGACNNNNNNNNNNTAACAATGTAAAAATTCGAGAAACAAAAGCCACTAAATCAGCCATTGTTCCATTATCCCAGTACCTTTTGGATCCACAAACTCAAGCACAACAGGCAAGGTTATTGGCAACTTTAGCTCTTGGGGATCTGTTTCAGAATGAAGGTCTTGCTCGAACAGCTGATGCAGTTTCTGCATGTCGTGCTTTAGTGAATGTTCTTGAAGAACAACCGACAGAAGAAATGAAAGTTGTGGCCATCTGTGCTTTGCAAAATCTTGTGATGTACAGTCGATCGAATAGGAGAGCTGTTGCAGAGGCCGGTGGTGTTCAGGTTGTATTGGATCTGATAGGATCAAGTGAGCCAGATACATCCATTCAGGCTGCAATGTTCATTAAACTTCTCTTCTCAAATAATACAATTCAAGAGTATGCTTCAAGCGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAAGATTTATGGGCCTCTGGTACTGTGAATGAGGAGTACTTGAAAGCCTTAAATTCTCTATTCAGCAACTTCCCACGACTGAGAGCAACTGAACCAGCAACACTTAGCATCCCCCATCTGGTTACATCCTTAAAGACAGGCTCAGAGGCTTGTCAGGAGGCTGCTTTGGATGCACTTTTTCTGCTACGACAAGCTTGGTCGGCATGCCCTGCCGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCTGATGCTATTCCATTCCTGCAGTACTTGATCCAGTCTGGTCCACCTCGGTTTCAGGAGAAGGCAGAATTTCTGTTGCAGTGTTTGCCGGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAGTCTGTTGGAAACCCAAGCGTTTACTGTAAACTTACATTGGGAAACACCCCTCCGAGGCAAACGAAGGTGGTGTCAACTGGCCCTAATCCAGAATGGGATGAGAGCTTTTCATGGTCGTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCATGCAAAAACAAGAGCAAAGTAGGAAAGAGTAAATTTGGGAAAGTAACAATACAAATTGATCGTGTGGTAATGCTTGGAGCAGTAGCTGGAGAGTACGCTCTATTGCCTCAAAGTAAAAGTGGGCCCCCAAGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGCCCATTGCTAGTGCTGCTGATGCTGCTCCTCCTCCTGCTCCTGCTCCTGCTGAGTAA 2913 0.4456 MPALVDLLKPIPDRPGAPFLALGLLIQLARDCPSNKVIMVEAGALEALTKYLSLSPQDATEEAATDLLGILFSTADIRKHESAFGAVAQLVAVLRLGGRAARLSAAKALESLFIADHIRNAEIARQAVQPLVEILSTGSEREQHAAIAALVRLLNENPSKALAVADVEMNAVDVLCRILSSDCSVELKGDAAELCCALFGNTRIRSTMAAARCVEPLVSLLVTEFSPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLYGRNYLLHEAISRALVKLGKDRPACKMEMVKAGVVESILSILHEAPDYLCAAFAELLRILTNNATIAKGQSAAKVVEPLFLSLTRQDFMPEGLHSTLQVLVNILEHPQCRADHTLSSRQVIEPLIPLLDSPIPAVQQLAAELLSHLLVEEHLQKDPVTQQVIGPLIRVLSSGIHILQQRAVKALVSIALTWPNEIAKEGGVVEISKVILQADPSIPHALWESSASVLSCILQFSSEFYLEVPIAVLVRLLRSGSESTVIGALNALLVLESDDGTSAVAMAESGAIEALLELLRSHQCEETAARXXXXNNVKIRETKATKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSEPDTSIQAAMFIKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYALLPQSKSGPPRNLEIEFQWSNKPIASAADAAPPPAPAPAE 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181302g00008 970 SMART arm_5 284 324 IPR000225 GO:0005515
Stsc181302g00008 970 SMART arm_5 658 698 IPR000225 GO:0005515
Stsc181302g00008 970 SMART arm_5 201 241 IPR000225 GO:0005515
Stsc181302g00008 970 SMART arm_5 242 282 IPR000225 GO:0005515
Stsc181302g00008 970 SMART arm_5 32 73 IPR000225 GO:0005515
Stsc181302g00008 970 SMART arm_5 372 410 IPR000225 GO:0005515
Stsc181302g00008 970 SMART arm_5 115 155 IPR000225 GO:0005515
Stsc181302g00008 970 SMART arm_5 533 609 IPR000225 GO:0005515
Stsc181302g00008 970 Pfam C2 domain 831 921 IPR000008 -
Stsc181302g00008 970 SMART C2_3c 832 928 IPR000008 -
Stsc181302g00008 970 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 831 952 - -
Stsc181302g00008 970 Gene3D C2 domain 830 956 IPR035892 -
Stsc181302g00008 970 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 831 949 IPR035892 -
Stsc181302g00008 970 Gene3D - 169 496 IPR011989 -
Stsc181302g00008 970 SUPERFAMILY ARM repeat 383 827 IPR016024 -
Stsc181302g00008 970 Gene3D - 497 565 IPR011989 -
Stsc181302g00008 970 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1 43 IPR000225 GO:0005515
Stsc181302g00008 970 Gene3D - 566 829 IPR011989 -
Stsc181302g00008 970 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 952 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Stsc181302g00008 970 CDD C2 833 923 - -
Stsc181302g00008 970 ProSiteProfiles C2 domain profile. 812 929 IPR000008 -
Stsc181302g00008 970 Gene3D - 1 168 IPR011989 -
Stsc181302g00008 970 SUPERFAMILY ARM repeat 1 367 IPR016024 -
Stsc181302g00008 970 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 183 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181302g00008 Stsc-Chr181302 57072 61081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181302g00008 28 164 U-box Gene Family AT5G42340 32.117 1.37e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181302g00008 - - gmx:100807370 1621.68