Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181302g00003 ATGATGAGCATATTAGAAGTGTTGTATCATCTGTACGCAAAAGCATTAGTTCTGCTGGCATACATGCTCATAGAAGCTGTCCTCTTTCTTCAGTACCTCAAATCAGACAAACGCAGCAGCAGCACCACCACCACAATCACCACAGCCCAGTATCTCAGATTCATTGAAGAGAAGAACCCCACAATTCACTACACCAAGAGCATGTTGAAGCAACCGGATCATGTTGAATGCAGAGTATGCTTGAATGAATTCCAGGAAGGTGATAAACTGAGGAACCTCAAGTGTCAGCACGCTTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAATCTTGTGCTACTTGCCCTCTTTGCAGGAACAAGCTCTTACCTGATTTTGTTGTGGCAAAGTATCTTAATCAGAATCACCATAATCATCATCACAACAATAATAGTAATGAGGTTGATTATTATGAAGCCAATGATGATCAGCTTTTTCTTTTGTTATCTTCAATGAGAGGTAGTAACCGTACTTTGCATAGATATCTCTGA 531 0.4049 MMSILEVLYHLYAKALVLLAYMLIEAVLFLQYLKSDKRSSSTTTTITTAQYLRFIEEKNPTIHYTKSMLKQPDHVECRVCLNEFQEGDKLRNLKCQHAFHRDCLDKWLQQSCATCPLCRNKLLPDFVVAKYLNQNHHNHHHNNNSNEVDYYEANDDQLFLLLSSMRGSNRTLHRYL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181302g00003 176 SMART ringv_2 76 119 IPR011016 GO:0008270
Stsc181302g00003 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 124 IPR013083 -
Stsc181302g00003 176 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Stsc181302g00003 176 SUPERFAMILY RING/U-box 59 127 - -
Stsc181302g00003 176 Pfam Ring finger domain 76 119 IPR001841 -
Stsc181302g00003 176 PANTHER - 1 169 - -
Stsc181302g00003 176 SMART ring_2 77 118 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181302g00003 Stsc-Chr181302 22006 22536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181302g00003 12 126 C3H Transcription Factor Family AT4G00305 30.894 8.49e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181302g00003 K16282 - gmx:102669811 197.208