Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181301g00020 ATGGGATTCTGGGGGATTGAAGTAAAGCCCGGGAAGCCATATCCTTACCATGCAGACAACATCCAGGGAAAGCTTCATGTCACTCACGCTACCCTAGGCATTGGCTCATCCAATGAGAAAACCATTCTTCAGTGCTCTTCTGGACACAAAAGTCCAATTTTCTTGTGTTCATTGATGCCGGATAAGATTGAGTCTTGCCCCTTGAATCTCGAGTTTGGTGATGATGACTTAGTGGCTTTCTCGGTCATTGGACCAAGAAGCATCCATCTTTCTGGTTACTTTGTTGCAGATGATGGTGATGACCTTAGGGATGACTATGAATATGATTCATTCCCAGAGGATGTTGAGGGGACCGATTCCGAGGATTCATCTGATTATGATTCTGAAGATGAATATGGTGATGACTCCACCGATGATAGTGATATGGAAATGTACCCATCTTCACATGTCCCAAATAGTGGAGTTAGAATTGAGGAAATAGTGGATGATGATATGCCTGAAAACGAAGAAGATCCAACTCAGAAATTGAAGAAAAAGAAACAGGCAGCTCAGATGAAAGAGAAAGATAACAAGAGTTCTCGGCTTCCGATTGTTGTTAGGGGTGAGACTGGCCATCCTGTCCTGGAAAGTGAAGATGATGTTGAAGAAAGTGAAGATGATGTATCAGAAAGTGAAGATGAGGATGGTTTTCCAATTTTGGCTGCTGAGAAAGGTAAATCTGAAGTGAAAGGAAACAAAGCACATAAGACAGCTGAGGAAGCTGGCAAAAATGCAGGTGTTAATCATTCTCCAAGCTTAAAACGGAAAGTTGAAAGTGCTGATGTAGATGAACAGCAGCAGCAAGACAGGAAAAAGAAGAAGAAAAAGAACAAGTCGAAAGAACCTGGTAAAGGGGAAAGTGCCCAGACATCTGGCAAAAGCAGTGTGATTAATGTTGCTACACCAGATGAAAAACATCCAGAGGAAGAGGAAGTTAAGACTACAGAAGTGCATGATAGAAAACCATCCAATGAGGACCTTGTTGAGAAGAAAAAGAAAAACAAAAAGAAGAACAAGGCTAAAGAGTCCCAAGGGGAAGATGCAACTCCAAGTCAAGTTGAGAAACCTGTTGAAAATAAGAAGCTGTCTGCCTCAGAGAAGAAAGGAAAGAAACAAGAGACCGAAACCAAGCCATCTCAAGTGAGAACCTTTCCAAATGGGTTGGTTATTGAGGAGATTTCTATGGGTAGGCCGGATGGCAACAGAGCAGCTCCTGGAAAGAAGGTCAGTGTTAGATATATTGGCAAGCTGCAGAAAAATGGGAAAATATTTGACTCGAATGTCGGAAGAGCACCCTTTAAATTTCACCTTGGTGTAGGACAAGTCATTAAGGGATGGGATGTTGGTGTCAATGGAATGAGGGTTGGGGACAAAAGAAGAATCACAGTTCCGCCATCTATGGGATATGGTGACAGACGCATTGGAAGTATACCACCAAATTCTTGGCTTGTGTTTGATGTTGAGTTAATTAATGTTGGCTGA 1521 0.4227 MGFWGIEVKPGKPYPYHADNIQGKLHVTHATLGIGSSNEKTILQCSSGHKSPIFLCSLMPDKIESCPLNLEFGDDDLVAFSVIGPRSIHLSGYFVADDGDDLRDDYEYDSFPEDVEGTDSEDSSDYDSEDEYGDDSTDDSDMEMYPSSHVPNSGVRIEEIVDDDMPENEEDPTQKLKKKKQAAQMKEKDNKSSRLPIVVRGETGHPVLESEDDVEESEDDVSESEDEDGFPILAAEKGKSEVKGNKAHKTAEEAGKNAGVNHSPSLKRKVESADVDEQQQQDRKKKKKKNKSKEPGKGESAQTSGKSSVINVATPDEKHPEEEEVKTTEVHDRKPSNEDLVEKKKKNKKKNKAKESQGEDATPSQVEKPVENKKLSASEKKGKKQETETKPSQVRTFPNGLVIEEISMGRPDGNRAAPGKKVSVRYIGKLQKNGKIFDSNVGRAPFKFHLGVGQVIKGWDVGVNGMRVGDKRRITVPPSMGYGDRRIGSIPPNSWLVFDVELINVG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181301g00020 506 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Stsc181301g00020 506 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 191 - -
Stsc181301g00020 506 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 419 506 IPR001179 GO:0003755
Stsc181301g00020 506 SUPERFAMILY FKBP-like 363 505 - -
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 104 141 - -
Stsc181301g00020 506 Gene3D Nucleoplasmin core domain 1 100 - -
Stsc181301g00020 506 Coils Coil 207 227 - -
Stsc181301g00020 506 PIRSF FK506-bp_FPR3 47 199 IPR023566 GO:0003755
Stsc181301g00020 506 PIRSF FK506-bp_FPR3 1 53 IPR023566 GO:0003755
Stsc181301g00020 506 PIRSF FK506-bp_FPR3 195 506 IPR023566 GO:0003755
Stsc181301g00020 506 Gene3D - 373 505 IPR046357 GO:0003755
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 170 195 - -
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 315 345 - -
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 297 311 - -
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 211 229 - -
Stsc181301g00020 506 FunFam Peptidyl-prolyl cis-trans isomerase 394 506 - -
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 104 394 - -
Stsc181301g00020 506 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 414 503 IPR001179 GO:0003755
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 372 390 - -
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 230 255 - -
Stsc181301g00020 506 MobiDBLite consensus disorder prediction 267 283 - -
Stsc181301g00020 506 Coils Coil 337 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181301g00020 Stsc-Chr181301 135698 139657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181301g00020 415 505 Calmodulin-binding Proteins AT5G48570 32.653 1.80e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181301g00020 K14826 - gmx:100792856 609.372