Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181301g00011 ATGGAACAACAACAGCAACAACATTCATCATCAGCAAACAGCAACAACAATAACGGTACAAGTAATCACATGAACAGTAGCAGTAGGCAAAGCAGCACAAGGTGGACACCAACAACGGATCAGATAAGGATATTGAAGGATCTATACTACAACAATGGGGTAAGGTCTCCAAGTGCAGAACAGATTCAGAGGATCTCTGCTAGGCTTAGACAATACGGCAAGATTGAAGGCAAGAATGTCTTCTACTGGTTCCAGAATCACAAGGCCCGGGAGAGGCAGAAGAAGAGATTCACCTCTGATTCTACAAATACCACCACCAATAATCCCAATAATCTCCCACTTCCAACCATGCATAGAGGATCCACCATTAACAACAACAACAACAATGCTCCTAATAATTATTGGAATAAACCTACTGAAGACACTACCACCACCACTACTACCACTACTACTACCTTTCACAACAAGTATTATTCTAACAACATGCCATCATCAACTGGGATTGCTTCTTCTTCTTCTTCTTCTGCTGGGATGATTGCTGTGGGCCAGATGGGGAATTATGGCTATGGATCTGTTCCCATGGAGAAGAATTTTAATAGGGAGTGCACAATATCTTGTGCAGGTGGAGGAAGCAGTGTTGGTGGTGCCATAAACCAGAACCTGCTGGGATGGGTTGGTGTGGACCCTTATTCTTCAACTTACACTCCTTCCTTTGACAATAAAATAACGCCTGAGAGTGAAACCCTTGAACAAGGTGAAGATGATGAAATGGATGATGTCACTGAGATTGAAACCCTGCCTTTGTTCCCTATGCGTGGCGAAGACATCCATGGCGGCTATTTCACCCTCAGATCCAATTCTTCTTCTTCTTCTTCTTTTAACTATGATCATCATCATCACGGATTCAACAACGCTGGTTCTCGTGCTTCGTTGGAGCTTAGTCTCAATTCCTATGGTCGCAAATCTCCAGATTACGCTTGA 981 0.4332 MEQQQQQHSSSANSNNNNGTSNHMNSSSRQSSTRWTPTTDQIRILKDLYYNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDSTNTTTNNPNNLPLPTMHRGSTINNNNNNAPNNYWNKPTEDTTTTTTTTTTTFHNKYYSNNMPSSTGIASSSSSSAGMIAVGQMGNYGYGSVPMEKNFNRECTISCAGGGSSVGGAINQNLLGWVGVDPYSSTYTPSFDNKITPESETLEQGEDDEMDDVTEIETLPLFPMRGEDIHGGYFTLRSNSSSSSSFNYDHHHHGFNNAGSRASLELSLNSYGRKSPDYA 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181301g00011 326 MobiDBLite consensus disorder prediction 99 147 - -
Stsc181301g00011 326 MobiDBLite consensus disorder prediction 1 37 - -
Stsc181301g00011 326 MobiDBLite consensus disorder prediction 92 147 - -
Stsc181301g00011 326 SUPERFAMILY Homeodomain-like 12 95 IPR009057 -
Stsc181301g00011 326 ProSiteProfiles 'Homeobox' domain profile. 28 94 IPR001356 GO:0003677
Stsc181301g00011 326 SMART HOX_1 30 98 IPR001356 GO:0003677
Stsc181301g00011 326 Pfam Homeodomain 32 93 IPR001356 GO:0003677
Stsc181301g00011 326 CDD homeodomain 33 95 IPR001356 GO:0003677
Stsc181301g00011 326 Gene3D - 24 93 - -
Stsc181301g00011 326 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 14 319 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181301g00011 Stsc-Chr181301 62549 64166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181301g00011 27 316 Wox Gene Family AT2G17950 37.667 6.14e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc181301g00011 Homeodomain 1.5e-17 CL0123