Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181301g00001 ATGGAATCATCGTGTGTCCCACCGGGGTTTCGGTTCCACCCAACTGATGAAGAGCTTGTTGGTTATTACCTAAGGAAGAAAGTAGCGTCTCAGAAGATTGACCTTGACGTTATCAGAGAGATCGATCTGTATCGTATTGAACCCTGGGATCTCCAAGAGAGATGTAGGATCGGGTATGAAGAGCAGAACGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACGGGGACTCGAACAAACAGGGCCACCATGGCAGGGTTCTGGAAGGCCACCGGAAGAGACAAGGCGGTGTACGATAAGTCGAAGCTGATTGGGATGAGGAAGACTCTGGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAGAAAACCGATTGGATCATGCATGAGTATAGACTTGAATCTGATGAAAATGGAGCCCCTCAGGAGGAAGGGTGGGTTGTGTGTAGAGCATTCAAGAAAAGGACAACGACAACGAACGTGCAAACGAAGAGTATGGAAGGATGGGATTCATCAAGATACTTGTATGAGGAAGCAAGCGGCGGCGGAGGCGGGAGCGGGGGCGGGGTTGTTGAGTCAATTGAGCAGCTGCTGTCAAGGCAGGGCGGTCATCATCATCATCAAAGCAGCAGCTTCATGTGCAAGCAAGAGATTGAGAACATGCAGGCAAACGCAGACCAATTTATAGAGCTTCCTCAGCTGGAGAGCCCAACAACTTTGCCGCTAGCTAATAGTAAGAGGCCATCAACAAGCAACAACAAGGAAGCGAGCAAGAAAGTAGTGACTACTGATTGGAGGGATCTTGATAAGTTTGTTGCATCTCAACTCAGTCATGGAGGAGACCACGACACACTCCCAAGCTTTATGGATAATAATCAAAGTGGTAACATCTCGGACATGTCGTTACTACAGCTTCTGCAAAGTAGTAGTAGTAGTCGAGACAACAACAATGAAGGGAACAAGTTGATGATGATGAGCAACATGAGCATGAGCCCCTTTCTAAACACAACCTCTGACTCTGATATTGGGATATGCGTCTTCGAAAATTAA 1053 0.4748 MESSCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGAPQEEGWVVCRAFKKRTTTTNVQTKSMEGWDSSRYLYEEASGGGGGSGGGVVESIEQLLSRQGGHHHHQSSSFMCKQEIENMQANADQFIELPQLESPTTLPLANSKRPSTSNNKEASKKVVTTDWRDLDKFVASQLSHGGDHDTLPSFMDNNQSGNISDMSLLQLLQSSSSSRDNNNEGNKLMMMSNMSMSPFLNTTSDSDIGICVFEN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181301g00001 350 MobiDBLite consensus disorder prediction 237 261 - -
Stsc181301g00001 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 255 - -
Stsc181301g00001 350 MobiDBLite consensus disorder prediction 237 259 - -
Stsc181301g00001 350 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Stsc181301g00001 350 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Stsc181301g00001 350 FunFam NAC domain-containing protein 15 159 - -
Stsc181301g00001 350 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Stsc181301g00001 350 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181301g00001 Stsc-Chr181301 1027 4646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181301g00001 1 350 NAC Transcription Factor Family AT2G18060 58.247 1.76e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181301g00001 NAM 2.8e-38 No_clan