Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181300g00004 ATGGAGGAAGAATCTAGGATATGCAACCTTCCATTGGTAAATAACCTGATTCAAAATAGGTTATGCCATCGAAAGGTTTTGATAGTTCTGGATAATGTTGAAAAGGGGATTCAGTTGGAGAAGTTGGCTATAAAGCAGGTAGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAACATATTTTGAGAGAGTATGGAGCCGATGAAGTTTACAAAGTTGAACTCTTAAATGACGAGAATGCTCTGCAATTGTTTTGTAGAAAAGCTTTCAAAAGTAATCATGTTGCCAAAGATTATGAAAGATTGACAGAGTCTGCGTTAGGATATGCTAAGGGACTTCCGTTAGCAATAAGAGTATTGGGCTCATTTTTGTTCGGGCGAGATGTCTGTGAGTGGAGTAGTGCATTAGTTAGACTGAAAGAGTATCCAACAAAAGATATTCTAGATGTGCTACGAATCAGCTTTGATGGTCTTGAGGATTTGGAAAAGGAATTATTTCTTGATATTGCCTGTTTCTTTCCAGATGGGGGAGAAGGGTCTGTGAAAGAGATTTTACGTATTCGAGGATTTCATCCTGATATTGATATAGGAGTTCTCATTGAAAAATCACTCATAACTCGTGACCGCTGGGGGATCACCATGCATGATCTGCTGAGAGATTTGGGTAGAAGTATTGTTCGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGCAGGTTATGGAATCTAAAGGATCTAAGCCATGTCTTGCGTGAAAACAAGGAAGCAGAGAACCTTGAAGGCATAGTTCTACCAAGATTATTTCTTCGGGATAGGAAAGAGTTGTCAAAAATGACAACATTGAGGGTTGAAGCTTTAACACAAATGAGTCATCTTAAATTACTCATTCTCAGAGAAGTGAATTTCTCAGGATACCTTGATTTTCTTTCTAATGAGTTGGGATATCTTTATTGGGAAGACTATCCTTTAACCTCTTTGCCATCAAGCTTTCAGCCAAATAAACTCGTTCAATTAATCCTACACTATAGCAACATCAAAGAACTTTGGGATGGAATAAAGGATCTACATAATTTGACACGTATGGAACTATGTTATTCCAAAAATCTTGTGAAGATACCAAATTTATCTCAGGCCCCAAATCTTGAACGCCTAGATCTTAAAGGATGTGTTAAACTTGTACATCTTGATGCATCTATTGGTTCTCTAGAAAAGCTTAGTTTCTTGAATCTGGAAAACTGCAAAAATCTTATTAGTATTCCCAACAGCATATTTCATCTTAATTCTCTTAAAATTTTTATTCTATCTGGCTGTTCAAAATTATTCAAGTATCAGTTGTTAGAGAAACCAAGAAAAAGCGAGGAGTTGAATACATGTCAAAGTGTGCAAACCCATATGACAGCTTCCATATGCAAAACTCTTACAAGACCTCTCCATTTTTTCTCCTCTAGAAGGCGTCCCAATTCAGTTGGTTTGTTGTTGCCTTGTTTGTCTCGTTTCCCAGCATTGGTAACTCTTGACATAAGTTTCTGTAATCTACTTCAAATCCCTGATGCTATTGGAAATTTACATAGTTTACTGAGATTAAACATAGGGGGAAACAATATTGTTACGCTACCTGATTGCATCAAGGAACTTCCCAAGCTGAGGGAGTTGAACTTAGAGTACTGTAATCATCTAAAGTGGTTGCCAAGTACCCATTTGCCAATAGGAGGTGGAGGATTATATGTTTTCAACTGCCCCGATTTGAGTGACACGGAAGGTTGTCGTGTCACAGCTATTTCGTGGATGATAAAAATTATTCAGGTTTCAGCTTCAATTCTTCCTTTGTTTTCCCATTTTTCTTGTCTCTGTATACTTTGA 1863 0.3736 MEEESRICNLPLVNNLIQNRLCHRKVLIVLDNVEKGIQLEKLAIKQVGRGSRIIIVSRDEHILREYGADEVYKVELLNDENALQLFCRKAFKSNHVAKDYERLTESALGYAKGLPLAIRVLGSFLFGRDVCEWSSALVRLKEYPTKDILDVLRISFDGLEDLEKELFLDIACFFPDGGEGSVKEILRIRGFHPDIDIGVLIEKSLITRDRWGITMHDLLRDLGRSIVREKSPKEPRKWSRLWNLKDLSHVLRENKEAENLEGIVLPRLFLRDRKELSKMTTLRVEALTQMSHLKLLILREVNFSGYLDFLSNELGYLYWEDYPLTSLPSSFQPNKLVQLILHYSNIKELWDGIKDLHNLTRMELCYSKNLVKIPNLSQAPNLERLDLKGCVKLVHLDASIGSLEKLSFLNLENCKNLISIPNSIFHLNSLKIFILSGCSKLFKYQLLEKPRKSEELNTCQSVQTHMTASICKTLTRPLHFFSSRRRPNSVGLLLPCLSRFPALVTLDISFCNLLQIPDAIGNLHSLLRLNIGGNNIVTLPDCIKELPKLRELNLEYCNHLKWLPSTHLPIGGGGLYVFNCPDLSDTEGCRVTAISWMIKIIQVSASILPLFSHFSCLCIL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181300g00004 620 Pfam NB-ARC domain 15 142 IPR002182 GO:0043531
Stsc181300g00004 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 170 IPR027417 -
Stsc181300g00004 620 PRINTS Disease resistance protein signature 20 34 - -
Stsc181300g00004 620 PRINTS Disease resistance protein signature 111 125 - -
Stsc181300g00004 620 PRINTS Disease resistance protein signature 401 417 - -
Stsc181300g00004 620 Pfam Leucine Rich Repeat 335 354 IPR011713 -
Stsc181300g00004 620 Gene3D - 76 160 IPR042197 -
Stsc181300g00004 620 SUPERFAMILY L domain-like 215 565 - -
Stsc181300g00004 620 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 445 IPR044974 GO:0006952
Stsc181300g00004 620 Pfam Leucine rich repeat 501 560 IPR001611 GO:0005515
Stsc181300g00004 620 Gene3D Ribonuclease Inhibitor 235 466 IPR032675 -
Stsc181300g00004 620 Gene3D Ribonuclease Inhibitor 467 585 IPR032675 -
Stsc181300g00004 620 Gene3D - 2 74 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181300g00004 Stsc-Chr181300 29478 32361 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181300g00004 15 584 WRKY Transcription Factor Family AT5G45050 31.751 6.38e-66 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181300g00004 - - aip:107628789 635.565