Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181300g00001 ATGGATTGCATGAGAATCCAAAGCACCTTGTCTCAGAGCAAGAATTGGAAATATGATGTGTTTGTCAGTTTCAGAGGCGAGACTCGCTTCAACTTCACTGATCATCTTTTTGCTGCTCTTCACAGACACGGCATACTTGCCTTCAGGGATGATACTAAGCTCCAGAAAGGAGGACCTATATCACCAGGGCTTCTGGAAGCTATTGAAGGATCACAGGTTCTGATTGTGGTTTTCTCAATGAACTATGCTACCTCCACATGGTGTTTGCAAGAACTCGCAAACATAGCTGATTGCATAGAAATACGAGGACACCGTGTTCTGCCTGTTTTTTATGATGTGAGTCCATCTGAGGTCAGAAAGCAAAGTGGAAACTATGAAGTAGCCTTTAAGGAACATGAAGAAAGATTCAAAGATGATGCAGAGATGATGGAGCAAGTGCGAAGATGGAGGGCAGCTCTAACACAAGTTGCCAGTCTCTCTGGCTGGGATGTGAAGGATAAGTCACAAACTGTTGAGATTGAAAAAATTGTCAAAGAGGTAACAAGAATCTTGACTCCCAAACTATCTAGTCCATCTAATGATATAGTTGGAATGCACTCCCCTTTAGAAGAACTAGAAAAGCTTCTAGTTTTGGACTCAGATGATGATGTTCGAATTGTAGGGATTTGTGGAATGGGCGGCATAGGAAAGTCAACTCTCGCCACTATTTTATATGAAAAGATCTCTCATCAATATGATGTTTCATGTTTTGTGGATGATGTAAGTAAAATCTATGGAGATTATGGTTCGCTTGGTATACAAAAGCAGCTTCTTTGTCAAGTTTTCATGGAAGAAGAATCTCGAATATGCAACCTTTCATGGGCAAATAATCTTATTCAAAATAGGGTACGCCGTCGAAAGGTTTTGTTAGTTCTGGATAATGTTGAAAAGGGGATTCAGTTGGAGAAGTTGGCTATAAAACGAGAATGGGTAGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAACATTTATTGAGAGAGTATGGAGTGGATGATGTTTACAAAGTTCAACTCTTAAATGATGAGAATGCTCTCCAATTGTTTTGTAGAAAAGCTTTCAAAAGTAATCATGTTGCAAAAGATTATGAAAGCCTGACAGAGTCTGCATTAGCATATGCTAATGGACTTCCATTAGCAATAAGAGTATTGGGATCATTTTTGTTTGGGCGAGATATCTCTGAGTGGAGTAGTGCATTGGTAAGGCTGGAAGAAAAGTCAACAAAAGATATTCTGGATGTGCTCCGGATAAGTTTTGATGGACTTGAGGATATGGAAAAGGAAATATTTCTTGATATTGCCTGTTTCTTTCCTTACGAAGTTGAAGGATACGTGAAAGATATTTTACGTATTCGAGGATTTCATCCTGATATTGGTATAAGAACACTCATTGATAAATCACTCATAACTTGTGATGGGTGGTGGATCCAGATGCATGATCTGTTGAGAGAGTTGGGTAGAAACATTGTTCGAGAAAAATCACCTAGTGAACCAAGAAAGTGGAGTAGGTTATGGAAATATAAGGATCTAAGCGATGTCTTGCGAGAAAATGAGATAGCAAAGAACCCTGAAGCTGTAGTTCTGAGAGAATATGTTGAAACGAGGGAAGAGGTGTCAGTACAAGCTTTATCACAAATGAGTCATCTGAAATTACTCATACTTATTGACATACAGTATTTCTCAGGAAACCTGCATTTTCTTTCTAATGATTTGGAATATCTAGAATGGAATAGATATCCTTTCAGATGTTTGCCATCAAGCTTTCAGCCATATAAACTCGTCAAATTAATCCTACATCATAGCAACATCAAAGAACTCTGGGAGGGAACAAAGGATCTACATAATTTGACACATATGGAATTGTGCAATTCAAAACATTTGGTAAAGATAGCAAATTTATCCCAAGCCCCAAATCTTGAGCACCTAGATCTTAAAGGGTGTGTTAAACTTGTTCACCTTGATGCTTCCATTGGTTCTCTAGAAAAGCTTGGTTTCTTGAATTTGGAAAACTGCAAAAATCTCGTTAGTATTCCCAATAGCATATTTCATCTTAATTCTCTTCAACATTTGGATCTATCTGGCTGTTCAAAATTATTTAAATATCAGTTGTTAGACAAACCAAGACATAGCGAGCAGTTCAATACAGGTCAAAGTGTGCAAAGGCGTATGACATCGTCCGTATGCAATACTCTCACAAGGACTCTCCATTTTTTATCTTCTAGACGGCGAGCCAATTCAGCTGGTTTGTTGGTGCCTTCTTTGTCTCATTTCCCAGCTTTGACATTTCTTGATATAAGTTTCTGTAATCTAGTTCAAATCCCCGATGCGGTTGGAAATTTACGTTGTTTAGAAAGATTAAACTTAGGCGGAAACAATATTGTTACACTACCTAATTGGATCAAGGAACTTCCCAAGCTGTGTGAGTTGAACTTGCAGTACTGTAATCATCTAAAGTGGTTGCCAAGTACGCTTTTGCCGAAAGGAAGAGTTAGTCACGGAGGATTATATGTTTTCAACTGCCCCAATTTGAGTGATACGGAAGGTTCTTGTCAAACAGCTATTTCATGGATGATAAAAGCAATTAAGGTGAACCTACAATGCTCTTTCTCCAGTTTCAGAATTGAAGTTGTTATTCCAGGAAGTAAAATTCCAAGGTGGTTCGACAAACAGAATACTGGTGATTCAGTGGAGCTAGATCCTTCTCCCATTATGGATGACAATAATTGGATTGGCATTGCTTTGTGTGCAACATTTGTCGTACATAATGATCTTCTTGTAGAAGCGAAGTTTGTTGATATTATTGGTTATGGTTTTCGTCATAGGTCTGGTAGGAACCTTTATTCCAATGTTCCAATACGTCTTAATCAAGATCTTATCACAAGTGAGTTAGATCATATATTGCTAATATTTTTCTCCCGTGAAGAGTTCATTAATACTTATGTAAGTTTTATAAACAAAGGAGAATTTGATCTTGACGGTATTGAATTGAGTATAAACTCTATTATTTATTCAGAAGTGAAGAGTTGTGGTTACCGTTGGGTATTTAAGGAAGATTTGGAACAATTTAACCAAACAATGATGTACAGCGCCAATTCTTCAGCCCAGAATCAGAAGCAGAGGTTTTTGGCAATTGAAGATGAGCAATAG 3189 0.3785 MDCMRIQSTLSQSKNWKYDVFVSFRGETRFNFTDHLFAALHRHGILAFRDDTKLQKGGPISPGLLEAIEGSQVLIVVFSMNYATSTWCLQELANIADCIEIRGHRVLPVFYDVSPSEVRKQSGNYEVAFKEHEERFKDDAEMMEQVRRWRAALTQVASLSGWDVKDKSQTVEIEKIVKEVTRILTPKLSSPSNDIVGMHSPLEELEKLLVLDSDDDVRIVGICGMGGIGKSTLATILYEKISHQYDVSCFVDDVSKIYGDYGSLGIQKQLLCQVFMEEESRICNLSWANNLIQNRVRRRKVLLVLDNVEKGIQLEKLAIKREWVGRGSRIIIVSRDEHLLREYGVDDVYKVQLLNDENALQLFCRKAFKSNHVAKDYESLTESALAYANGLPLAIRVLGSFLFGRDISEWSSALVRLEEKSTKDILDVLRISFDGLEDMEKEIFLDIACFFPYEVEGYVKDILRIRGFHPDIGIRTLIDKSLITCDGWWIQMHDLLRELGRNIVREKSPSEPRKWSRLWKYKDLSDVLRENEIAKNPEAVVLREYVETREEVSVQALSQMSHLKLLILIDIQYFSGNLHFLSNDLEYLEWNRYPFRCLPSSFQPYKLVKLILHHSNIKELWEGTKDLHNLTHMELCNSKHLVKIANLSQAPNLEHLDLKGCVKLVHLDASIGSLEKLGFLNLENCKNLVSIPNSIFHLNSLQHLDLSGCSKLFKYQLLDKPRHSEQFNTGQSVQRRMTSSVCNTLTRTLHFLSSRRRANSAGLLVPSLSHFPALTFLDISFCNLVQIPDAVGNLRCLERLNLGGNNIVTLPNWIKELPKLCELNLQYCNHLKWLPSTLLPKGRVSHGGLYVFNCPNLSDTEGSCQTAISWMIKAIKVNLQCSFSSFRIEVVIPGSKIPRWFDKQNTGDSVELDPSPIMDDNNWIGIALCATFVVHNDLLVEAKFVDIIGYGFRHRSGRNLYSNVPIRLNQDLITSELDHILLIFFSREEFINTYVSFINKGEFDLDGIELSINSIIYSEVKSCGYRWVFKEDLEQFNQTMMYSANSSAQNQKQRFLAIEDEQ 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181300g00001 1062 SUPERFAMILY L domain-like 491 839 - -
Stsc181300g00001 1062 Pfam Leucine rich repeat 772 831 IPR001611 GO:0005515
Stsc181300g00001 1062 Gene3D - 10 182 IPR035897 -
Stsc181300g00001 1062 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 712 IPR044974 GO:0006952
Stsc181300g00001 1062 Pfam C-JID domain 892 1034 IPR045344 -
Stsc181300g00001 1062 Gene3D - 183 349 IPR027417 -
Stsc181300g00001 1062 Gene3D Ribonuclease Inhibitor 550 736 IPR032675 -
Stsc181300g00001 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 447 IPR027417 -
Stsc181300g00001 1062 Gene3D - 353 437 IPR042197 -
Stsc181300g00001 1062 PRINTS Disease resistance protein signature 219 234 - -
Stsc181300g00001 1062 PRINTS Disease resistance protein signature 388 402 - -
Stsc181300g00001 1062 PRINTS Disease resistance protein signature 696 712 - -
Stsc181300g00001 1062 PRINTS Disease resistance protein signature 295 309 - -
Stsc181300g00001 1062 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Stsc181300g00001 1062 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc181300g00001 1062 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Stsc181300g00001 1062 ProSiteProfiles Leucine-rich repeat profile. 796 817 IPR001611 GO:0005515
Stsc181300g00001 1062 Gene3D Ribonuclease Inhibitor 740 859 IPR032675 -
Stsc181300g00001 1062 SMART till_3 17 159 IPR000157 GO:0007165
Stsc181300g00001 1062 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Stsc181300g00001 1062 Pfam NB-ARC domain 202 423 IPR002182 GO:0043531
Stsc181300g00001 1062 Pfam TIR domain 17 190 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181300g00001 Stsc-Chr181300 2791 6609 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181300g00001 13 823 WRKY Transcription Factor Family AT4G12020 31.490 3.92e-88 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181300g00001 - - adu:107476580 1308.12