Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181299g00026 ATGGGTCGTGGAAAGATTGAGATAAAGCTGATCGAGAACCCAACCAACAGGCAAGTCACATACTCAAAGAGAAGAAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCTAAGGTCTCACTCATCATGTTCTCCAAAAACAACAAGATGCATGAGTACATCAGCCCTGGCCTTAGCACAAAGAAGGTCATTGATCAGTATCAGAAGACTTTGGGGGATGTTGATCTCTGGCATTCCCACTATGAGAAAATGCTTGACAACTTGAAGAAACTCAAAGATATTAATAATAAGCTCAGAAGACAAATCAGGAATCGGATAGGGGAGGGTAATCTGGATATGGACGATCTGAGCTTTCAGCAACTGCGTACTCTTGAAGAAGATATGGTTTCTGCCATTTCCAAAATACGCGAACGAAAGTTCCATGTGATCAAAACTCGGACTGAAACCTGTAGGAAAAAGGTGAGGAGCTTGGAGCAGATGAACGGAAATCTCCTTCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTGTATTGCACGATGAAGGAGGAGAGCAGGAATCAGCAGTTGCACTTGCCAATGGAGCCTCCAACCTCTATGCCTTCTGCCACCACCACCACACTCATCTCAATCATCACCTTCATAACCACCATGCACCACCACCAGAACCCTTCAAAACTGATGATCTCCGCCTCGCTTAA 717 0.4393 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLSTKKVIDQYQKTLGDVDLWHSHYEKMLDNLKKLKDINNKLRRQIRNRIGEGNLDMDDLSFQQLRTLEEDMVSAISKIRERKFHVIKTRTETCRKKVRSLEQMNGNLLLELKEKCVIHPQFVLHDEGGEQESAVALANGASNLYAFCHHHHTHLNHHLHNHHAPPPEPFKTDDLRLA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181299g00026 238 Coils Coil 85 105 - -
Stsc181299g00026 238 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Stsc181299g00026 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181299g00026 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181299g00026 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181299g00026 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc181299g00026 238 Pfam K-box region 82 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181299g00026 238 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181299g00026 238 MobiDBLite consensus disorder prediction 217 238 - -
Stsc181299g00026 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181299g00026 238 MobiDBLite consensus disorder prediction 221 238 - -
Stsc181299g00026 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181299g00026 238 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Stsc181299g00026 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Stsc181299g00026 238 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Stsc181299g00026 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181299g00026 Stsc-Chr181299 149173 151241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181299g00026 1 232 MADS-box Gene Family AT3G54340 48.085 8.09e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181299g00026 K-box 7.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181299g00026 K09264 - gmx:100784496 377.481