Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181299g00024 ATGCTTTACCAAACTCCCCATCCTCTCCTCTTTCAATTTCATCCCTTCCCATCTTCATCTTCGCCTTCATTATTATCCATTCTACCTCTATCATCGCATCTTCCTCTCATTAAGGTGGAAGAAAGAGAAATGGAGTGCATGGTGGAGGGAGCGTTGAAGACAAGTTTTAGAAAAGAGATGAAATATAGCACATCCCCGCAGAGGCTGTTCATGGAGGAACTCTCCCTTCAAAACAATGGCGCCCCTTCTGACGACCTATTCGTTGACCAACTCCTTGACTTCTCGCACGTAGAAGTAGAGCAAGAAGAAGAAGAAGAAGGTGCTGGTCCTGGAGTAGACTCTGCTTCGGAGTCAGCAGTGTCCCCGCAACACAGCCACCACCAAGTGGAAGAGCCCTTCCCCCCTCTCCCCACCACAGACCTCAACCTTCCGGATGATGTGGCCGACCTGGAGTGGCTCTCCCATTTTGTGGAGGATTCCTTCTCTCCTCCCATGGTGGCCGCAGCCCTACCAACAAACTCCTTCAAAGCCTCAACGCCACATCCCTGTTTCAACACCCCTGTTCCTGCAAAGGCACGCACCAAGCGAACCCGCACCGGTCTCAGGGTTTGGCCACTCGCCTCTCCTTCCTTCGCCACCACTGACTCCTCCTCAACCTCCTCCACCTCTTCCTCCCCTTCCATGGACCACCTTAGTTCCAACGCTCCCCCCAAGAAGCCCAAGAAAAAGCCCTCTCCGGAACCTGGATTTCCGGCACAGGCGCCGCGCCGCTGCACCCATTGCGGCGTCCAGAAGACCCCACAGTGGAGAACGGGACCTCTCGGGGCCAAAACCCTCTGCAACGCCTGCGGGGTTCGCTACAAGTCGGGTCGGCTCTTACCCGAATACAGACCCGCTTGCAGCCCAACGTTCTCCAGCGAGTTGCACTCCAACCACCACCGGAAAGTTCTGGAGATGCGGCGAAAGAAGGAGACCATAAGTGGTGGGGTTGACACCGCCGGCTTGGCCCCTCCTCCGGTTGTTCCCAGTTTTTGA 1035 0.5556 MLYQTPHPLLFQFHPFPSSSSPSLLSILPLSSHLPLIKVEEREMECMVEGALKTSFRKEMKYSTSPQRLFMEELSLQNNGAPSDDLFVDQLLDFSHVEVEQEEEEEGAGPGVDSASESAVSPQHSHHQVEEPFPPLPTTDLNLPDDVADLEWLSHFVEDSFSPPMVAAALPTNSFKASTPHPCFNTPVPAKARTKRTRTGLRVWPLASPSFATTDSSSTSSTSSSPSMDHLSSNAPPKKPKKKPSPEPGFPAQAPRRCTHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKETISGGVDTAGLAPPPVVPSF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181299g00024 344 MobiDBLite consensus disorder prediction 209 232 - -
Stsc181299g00024 344 PANTHER GATA TRANSCRIPTION FACTOR 72 325 - -
Stsc181299g00024 344 MobiDBLite consensus disorder prediction 98 142 - -
Stsc181299g00024 344 CDD ZnF_GATA 257 305 IPR000679 GO:0006355|GO:0043565
Stsc181299g00024 344 SMART GATA_3 252 306 IPR000679 GO:0006355|GO:0043565
Stsc181299g00024 344 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Stsc181299g00024 344 FunFam GATA transcription factor 250 332 - -
Stsc181299g00024 344 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Stsc181299g00024 344 MobiDBLite consensus disorder prediction 186 258 - -
Stsc181299g00024 344 Pfam GATA zinc finger 258 292 IPR000679 GO:0006355|GO:0043565
Stsc181299g00024 344 Gene3D - 251 326 IPR013088 GO:0006355|GO:0008270
Stsc181299g00024 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 252 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181299g00024 Stsc-Chr181299 136497 138044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181299g00024 47 344 C2C2-Gata Transcription Factor Family AT5G66320 45.739 1.90e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc181299g00024 GATA 8.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181299g00024 - - aprc:113869559 301.982