Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181299g00022 ATGCTTATGATGGAGCAGTTAACCCACCGTGGGCTTGCGAAGCTAGCAAAACAATACGGCGGAATCTTCCACCTGCGCATGGGGTTCCTCCACATGGTGGCGGTTTCCGACCCTGAGTCAGCAAGGCAAGTCCTCCAAGTCCAAGACAACATCTTCTCAAACCGTCCAGCCACCATAGCCATAAGCTACCTAACCTACGACCGCGCCGACATGGCATTCGCCCACTACGGTCCTTTCTGGCGGCAGATGCGTAAGCTGTGCGTCATGAAGCTCTTCAGCCGGAAGCGGCAAGAGTCATGGGAGTCCGTCAGAGACGAAGTGGACAAGGTGGTCCGTTCCGTTGCCTCCAACACCGGAAAATCCATCAACATTGGCGAGCTGGTTTTCAACCTTACGAAGAACATCATCTACCGCGCTGCCTTCGGGTCCAGTTCCCAAGAAGGGCAAGACGAGTTCATCAAGATCCTTCAGGAGTTCTCTAAGCTGTTTGGAGCTTTCAACATCGCAGATTTCATCCCTTTCCTGGGTGGAATCGATCCTCAGGGCCTTAACAAGAGGCTGGTGAAGGCTCGTGGTGCTTTGGACAGTTTCATAGACAAGATCATCGACGAGCATGTTGAGAAGATGAAGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAGTATGAGTGTGAGTCTGATATGGTGGATGAGTTGTTGGCTTTTTACAGCGAGGAAGCCAAGGTGAAGAATGAAGCGGAGGATCTGCAAAACTCTATCAAACTCACAAAGGACAATATCAAAGCCATCATTATGGACGTAATGTTTGGAGGTACAGAGACGGTGGCGTCGGCAATAGAGTGGGCCATGGCAGAGCTCATGAGAAGCCCAGAAGAACTGAAGCGGGTTCAACAGGAGATGGCCCAAGTTGTAGGCCTGGACAGGAGAGTTGAGGAGTCAGACTTGGAGAACCTCACCTACCTCCGATGCGCACTCAAGGAGACCCTCCGCCTCCACCCCCCCATCCCCCTCCTCCTACACGAGACAGCGGAGGATACAACCATCGGAGGATACTTTATCCCCAAGAGAGCGCGCGTCATGATCAACGCCTGGGCCATAGGAAGGGACCCCACCTCCTGGGACGACCCGGAGACCTTCAGGCCCGGGCGATTCTTGAAGAGCGGGGTGGCGGACTTCAAGGGGAGCAACTTCGAGTTCATACCGTTCGGGTCGGGTCGAAGGTCTTGCCCGGGGATGCAGTTGGGGCTGTACGCGCTGGAGGTGGCGGTGGCACATCTGCTCCACTGCTTCACGTGGGAGCTGCCAGATGGGATGAAGCCCAGCGAGATGGACATGGGCGACGTCTTCGGACTCACCGCTCCCAGAGCCACTCGCCTCCACGCTGTTCCCACCAAGCGCCTCCTCTCCCCTCTCTCTTAG 1437 0.5358 MLMMEQLTHRGLAKLAKQYGGIFHLRMGFLHMVAVSDPESARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRQESWESVRDEVDKVVRSVASNTGKSINIGELVFNLTKNIIYRAAFGSSSQEGQDEFIKILQEFSKLFGAFNIADFIPFLGGIDPQGLNKRLVKARGALDSFIDKIIDEHVEKMKNNNNNNNNNNNNNNNNEYECESDMVDELLAFYSEEAKVKNEAEDLQNSIKLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEELKRVQQEMAQVVGLDRRVEESDLENLTYLRCALKETLRLHPPIPLLLHETAEDTTIGGYFIPKRARVMINAWAIGRDPTSWDDPETFRPGRFLKSGVADFKGSNFEFIPFGSGRRSCPGMQLGLYALEVAVAHLLHCFTWELPDGMKPSEMDMGDVFGLTAPRATRLHAVPTKRLLSPLS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181299g00022 478 Coils Coil 206 231 - -
Stsc181299g00022 478 FunFam Cytochrome P450 84A1 1 471 - -
Stsc181299g00022 478 PRINTS E-class P450 group I signature 328 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 131 149 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 285 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 415 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 16 35 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 40 61 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 368 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 405 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS E-class P450 group I signature 265 282 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 408 417 IPR017972 GO:0005506|GO:0016705
Stsc181299g00022 478 Pfam Cytochrome P450 8 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 CDD CYP71-like 18 465 - -
Stsc181299g00022 478 Gene3D Cytochrome P450 1 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS P450 superfamily signature 406 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS P450 superfamily signature 329 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS P450 superfamily signature 276 293 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PRINTS P450 superfamily signature 415 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 PANTHER CYTOCHROME P450 84A1-RELATED 1 477 - -
Stsc181299g00022 478 SUPERFAMILY Cytochrome P450 5 472 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181299g00022 478 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181299g00022 Stsc-Chr181299 118403 121056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181299g00022 1 477 Monolignol Biosynthesis Gene Families AT4G36220 77.149 0.0 784
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181299g00022 K09755 - gmx:100783430 804.668