Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181299g00014 ATGGACCAACCTCTTCAACAACAACAAACCCCCACCGCCGATCTCCTTAGGGATTCCGATTCACACCTTTCTGGAGTTCCTGACCTCGCTCACAGAGGAGCGCCTTCTGCCTGCGCTCTCACCTTCGAGGTTCCCGTGCCTGACGCCACCTCTCTCAAGAGGAAGCGCGGTCGTCCGGCTAGGGGAGTTCCGAGAGCCACGGCGTCTCCTGCTCCGGTGAGGCAGAAGAAGGAGGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCCTCGTTCTCTGTGATCGCAGGGGTTGTCCTAAAGCGTATCATCCTGCTTGTATTAAGCGAGACGAAGCTTTTTTTCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGGCATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAGGGGATGTACAAGAGATGCTGATTTTGTTAGTTTAAGAGGAAATAAAGGATTCTGTGGAATGTGCATGAGAACTATAATGCTGATTGAGAACCCTGGCGAGGAAAATAAGGTAACTGATACGATAGCTTAA 576 0.4948 MDQPLQQQQTPTADLLRDSDSHLSGVPDLAHRGAPSACALTFEVPVPDATSLKRKRGRPARGVPRATASPAPVRQKKEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCQKASHYMCYTCTYSLCRGCTRDADFVSLRGNKGFCGMCMRTIMLIENPGEENKVTDTIA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181299g00014 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 173 IPR013083 -
Stsc181299g00014 191 SUPERFAMILY FYVE/PHD zinc finger 54 127 IPR011011 -
Stsc181299g00014 191 ProSiteProfiles Zinc finger PHD-type profile. 80 146 IPR019787 -
Stsc181299g00014 191 MobiDBLite consensus disorder prediction 51 72 - -
Stsc181299g00014 191 MobiDBLite consensus disorder prediction 1 17 - -
Stsc181299g00014 191 FunFam Zinc finger CCCH domain-containing protein 19 72 172 - -
Stsc181299g00014 191 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 24 186 - -
Stsc181299g00014 191 ProSitePatterns Zinc finger PHD-type signature. 83 143 IPR019786 -
Stsc181299g00014 191 SMART PHD_3 82 128 IPR001965 -
Stsc181299g00014 191 CDD PHD5_NSD 82 127 - -
Stsc181299g00014 191 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181299g00014 Stsc-Chr181299 100293 101815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181299g00014 80 168 PHD Transcription Factor Family AT5G36670 34.653 1.01e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181299g00014 - - aip:107642933 355.14