Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181299g00013 ATGGAGCAACAGCAGCTTCAGCTCAGCGGAACTGCCACCGCCGGACCACCACAGTCGGACCACGGACCTAGGGATTTGGGAGATTCGAACCTCGTTCGAGTTCCTGGCGATGTTCTCATGACGGAGAGGGACGGCGACAGGAGTGTTCCCAATCCGGAAGTGGCAGTTAAGAGGAAGCGGGGTCGTCCGGCAAAGGGTGCTCCGAGGGTGGCGGCGGCTGGAGCTCCCCCGAGGCAGCAGCTGAAGAAGGAGGAGGAGGAAGAGGAGGATGTTTGCTTCATATGCTTCGATGGTGGAAGCTTAGTTCTTTGTGATCGCCGGGGTTGTCCTAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAGGCCTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTTTTGTCAGAAGGCCTCCCATTTTATGTGCTATACTTGTACATATTCACTGTGCAAGAGTTGTACAAAATATGCTGATTTCGTCTGTGTCAGAGAAAATAAAGGTTTGTGCGGAATATGCATGAGAACCATAATGCTGATTGAAAACAGTGCCCAGGGAAATAGGGAGAAGGTTGAAGGTCCCCATGAAATTTATAATACTAAGGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAACAAGAAATCTAGGAGACAGCCAATGCTTCATAACAATGGGGTTGGCTTTGATACGATAACTTCAGCCGGTGACAATTGTGTGCCTTTACCTGAATGCTCAAATTGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATTTCGCCTGTCTCAATTTGATGTCCAGGGGCTCTTGTTAGAGTATGTGAGGAAAAACAATCTTCGAGACCCCCAGCAGAAATGCCAAATTGTCTGTGATCATAGACTACTAAAATTGTTTGGAAGGGCACGTGTTGGCCACATTGAAACATTAAAGCTCCTTGAACCCCACTTTCTTATAAAAGACAAAGGCCCTGCAGAAGACACTCTTAGAGCAGGAGTCGTGGACAATGTTGCTAGCGAAGGGGAGGTCAAAGACAATTGCAGTAAGCAGTTGATGTTAGTTGATGATAAGGAATGTAAAACAGGTATAAAAGCTAATGTGCATTTGCCACAAAATAATCCAGACGTGTATGCTGCAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGGAGTCTTATGGAAAATCTAACTGAAGACGCTGAAACTGTTCGCGACAAGGTTGTTGGTTCATTTGTGCGGATAAGGATCACTAGTAGTGACAAAAAACAAGAGATGTACAGGCTTGTCCAAGTTGTAGGTACAAGTAAGGCTGCTGAACCTTACAAAATTGGAACAAGAACAACTGATCTGATGCTTGAGATTTTAAACTTAAATAGGAAGGAGGCCATATCAATAGATGAGATTTCAAATGAGGAGTTCTCTGAGGATGAATGCAAGCGTTTGCGTCAAAGTATAAAATATGGTCTTTCCAACAGATTGACAGTGGGTGAGATTATGGACAAAGCACTGACATTTCAAGCAATGAGAGTTAATGATTTGCTGGAAGCTGAGATACTGCGGCTTACTCATCTTCGTGATAGAGCAAGTGAAAAAGGGCATAGAAAAGAGCTCAGAGAATGTGTGGAGAAGTTACAGCTACTAAACACACCAGAGGAACGACAGCGCCGGCTGCGTGAAATTCCAGAGGTACACTCTGACCCAAATCTGGATTTGATGTTCGAGTCTGATGAAGATGCGGGAGAGTCAGATGAAAGGAAGCAAGATGGCAATATATGGTCAAAGTATCCTGGTTTTGACAGAAAAGAGAAGGAGCCCTCTTTGCCTAGAAGTTGTGATAGTGAACAGAACGAGAATGCCTGCATGACAAAAAGTCAGATCAAACCTAATGATACAGCATTTGGCGACAGCCCTAATGTAGTTGTGAAATCAGAAGCATCTAGTGTTGCATTGGACATTTCATCATCTCCTCAATCTGTAGGGATGGAAAAGTCATTTAATGATTTTGTGAATGATAAATCATGGCATTATCAGGACCCAACTGGGAAAGTTCAAGGACCTTTTTCCATGTTGCAGCTGTTTAAGTGGAATGCAAGTGGAGGTTTCCCTCCTAATCTCAGGATATGGAGGATAAATGAAAAACAAGATAACTCTATATTGTTAACCGATGCCCTCAGTGGGAAGTGTCCTGAAAATGTGTCAATGCCTTATTTCAGCCAACTGCTGTCTTTAGGGACCAGTGTTACAGTGGATACCAAAGAGGATGATAATAAAGATAATATTCAGGATGGTTGCAGCACTGCGGCAAGGAATGAAACTTGTTCAGACAACCAAATCAGCGAGCAGAACAGGGAGCAAAAGGTGGATGATACTCGTACCCAGTCTGATAGTAAAGATGAATCTGTTAGGAGCAATGGATGGCAGGAACAGCCCCATGCATACCATTCACAACCTTCAGTGGCTATTTCTGAGAGTATGAAGGAGAATTCTGATAAATTAAATGAAGGTAATGGGATCAGGGAAAACTCTGCAGATAAAGGCAATCCTGGTTTGAACAGGACTTCTGATGGTCAGAGTAATAGTGGGCAGAGTTACCAGAAGCAATCATACAGTGAAGATAATTCAGGGCAATCTTCTGAACAGAACTGGAGGGGCCCTAATGTAAACAGTTCTTCCAATTGTGTGGTTACCACAACAGCTGAAGTTTCTGTTACAAAGACATCACCACCTAAGCTAGGATTTGATTTGCATAGTTCTCNNNNNNNNNNAAATACTTCTTCCGATTGTGTGGTTACCACATCGGCTGAAGTTTGTGTGCCAAAGACATCACCACTTAAGCTAGGATTTGATTTGCATATTCCTCCATCCCAGCTTGAACAAGACTGGAGAGACCCTCATGTAAATACTAATTCCAGTTGTGTGGTTACTACATCAGCTGAAGTTTCTGTGACAAAGACATCCCCACTTAAGCTAGGATTTGATTTGCATAGTCCCCCTTCGCATCCTGCGTGCACTACATCTACTTGGCAAGCATTCATTGGTGAGACCACTGACTTTAGCTCATTAGTTGACGTTGATGAATCAGTCTCAGATCTGTTAGCTGAGGTGGAAGCAATGGAATCACTTGGTGGTGGTGGTGGTGGTGGAAGCGGTGGCTTGGAATCTCCCACTTCAATTATGAAATGTGGTGAGGAATTGACTGATAGTTCTAAAAATGATTGCCTCAGTTTTGCAGATGGGCTTAGCCCAGTACTTGAAGCAGGTAAAGGTGATGCACTTAGCTCCACTGGTGATTTGCACTTGCAATCTCAGTCAGCAACAGCAGAGGATCCATTGCGGCAAGCAGATATACATAATCATCATCAGAGAGTATCTGGGGAACATTCTTCAAGGAGTTCTGAAGTTAAGGTGGGTACAAAGAGCATTAGTGTTTCAGGTTATCAATGGGAATCAGGCCCAGAAAATTCAACCATTGGTCCATCCACTGCAACCTGGAGCATTGCTACAGACCCCACTTGGAGAGGGTCAGAGAATACAAACTTGGGATGGGGTGGAATGGATAGAGGAAATGTGAACATTGGCTGGGGAGTGGGGCAGTCAGCAGTGCAGGAGAACAGGAGCACAAATTCATACAGTCCCACACTTTCTCCAAGCTTTGGTGGAAGTCAAGCAAGATATGGCAGCGATCGACCTTCTGTGCCTAGAGATAGAGGTTTTCATGGTCATGGTAGGGAGTCAGCTTTTTCTAGAGGTAGAACTGCATGGAACCGGCAACCTTTATTTGGCGCTGGAAACGGAGGCTCACACAGGCCTCTGCCCAAAGGGCAACGAGTCTGTAAATTTTATGAAAGTGGGCGTTGTAAGAAGGGGGCGTCCTGTGATTACTTCCACCCATGA 3963 0.4421 MEQQQLQLSGTATAGPPQSDHGPRDLGDSNLVRVPGDVLMTERDGDRSVPNPEVAVKRKRGRPAKGAPRVAAAGAPPRQQLKKEEEEEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSFCQKASHFMCYTCTYSLCKSCTKYADFVCVRENKGLCGICMRTIMLIENSAQGNREKVEGPHEIYNTKDDKGSGSENSCIDIESNNLKNKKSRRQPMLHNNGVGFDTITSAGDNCVPLPECSNWASKELLEFVAHMKNGDTFRLSQFDVQGLLLEYVRKNNLRDPQQKCQIVCDHRLLKLFGRARVGHIETLKLLEPHFLIKDKGPAEDTLRAGVVDNVASEGEVKDNCSKQLMLVDDKECKTGIKANVHLPQNNPDVYAAINAHNINLIYLRRSLMENLTEDAETVRDKVVGSFVRIRITSSDKKQEMYRLVQVVGTSKAAEPYKIGTRTTDLMLEILNLNRKEAISIDEISNEEFSEDECKRLRQSIKYGLSNRLTVGEIMDKALTFQAMRVNDLLEAEILRLTHLRDRASEKGHRKELRECVEKLQLLNTPEERQRRLREIPEVHSDPNLDLMFESDEDAGESDERKQDGNIWSKYPGFDRKEKEPSLPRSCDSEQNENACMTKSQIKPNDTAFGDSPNVVVKSEASSVALDISSSPQSVGMEKSFNDFVNDKSWHYQDPTGKVQGPFSMLQLFKWNASGGFPPNLRIWRINEKQDNSILLTDALSGKCPENVSMPYFSQLLSLGTSVTVDTKEDDNKDNIQDGCSTAARNETCSDNQISEQNREQKVDDTRTQSDSKDESVRSNGWQEQPHAYHSQPSVAISESMKENSDKLNEGNGIRENSADKGNPGLNRTSDGQSNSGQSYQKQSYSEDNSGQSSEQNWRGPNVNSSSNCVVTTTAEVSVTKTSPPKLGFDLHSSXXXXNTSSDCVVTTSAEVCVPKTSPLKLGFDLHIPPSQLEQDWRDPHVNTNSSCVVTTSAEVSVTKTSPLKLGFDLHSPPSHPACTTSTWQAFIGETTDFSSLVDVDESVSDLLAEVEAMESLGGGGGGGSGGLESPTSIMKCGEELTDSSKNDCLSFADGLSPVLEAGKGDALSSTGDLHLQSQSATAEDPLRQADIHNHHQRVSGEHSSRSSEVKVGTKSISVSGYQWESGPENSTIGPSTATWSIATDPTWRGSENTNLGWGGMDRGNVNIGWGVGQSAVQENRSTNSYSPTLSPSFGGSQARYGSDRPSVPRDRGFHGHGRESAFSRGRTAWNRQPLFGAGNGGSHRPLPKGQRVCKFYESGRCKKGASCDYFHP 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181299g00013 1320 SMART gyf_5 695 750 IPR003169 GO:0005515
Stsc181299g00013 1320 SMART PHD_3 91 137 IPR001965 -
Stsc181299g00013 1320 CDD PHD5_NSD 91 136 - -
Stsc181299g00013 1320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 181 IPR013083 -
Stsc181299g00013 1320 Gene3D - 696 754 IPR035445 -
Stsc181299g00013 1320 ProSitePatterns Zinc finger PHD-type signature. 92 152 IPR019786 -
Stsc181299g00013 1320 Gene3D - 401 530 IPR036128 GO:0003677
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 602 633 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 39 60 - -
Stsc181299g00013 1320 SUPERFAMILY GYF domain 692 747 IPR035445 -
Stsc181299g00013 1320 CDD GYF 694 749 IPR003169 GO:0005515
Stsc181299g00013 1320 Coils Coil 534 554 - -
Stsc181299g00013 1320 Pfam GYF domain 697 738 IPR003169 GO:0005515
Stsc181299g00013 1320 SUPERFAMILY Plus3-like 401 528 IPR036128 GO:0003677
Stsc181299g00013 1320 SUPERFAMILY CCCH zinc finger 1295 1319 IPR036855 GO:0046872
Stsc181299g00013 1320 CDD SWIB-MDM2_like 263 338 - -
Stsc181299g00013 1320 Pfam Plus-3 domain 405 508 IPR004343 GO:0003677
Stsc181299g00013 1320 ProSiteProfiles GYF domain profile. 694 748 IPR003169 GO:0005515
Stsc181299g00013 1320 Pfam SWIB/MDM2 domain 265 338 IPR003121 -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 869 916 - -
Stsc181299g00013 1320 SMART rtf1 400 510 IPR004343 GO:0003677
Stsc181299g00013 1320 FunFam Zinc finger CCCH domain-containing protein 19 401 530 - -
Stsc181299g00013 1320 Gene3D SWIB/MDM2 domain 257 346 IPR036885 -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 1168 1207 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 804 827 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 1108 1130 - -
Stsc181299g00013 1320 SUPERFAMILY SWIB/MDM2 domain 263 339 IPR036885 -
Stsc181299g00013 1320 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 196 1320 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 1 81 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 593 637 - -
Stsc181299g00013 1320 FunFam Zinc finger CCCH domain-containing protein 19 81 181 - -
Stsc181299g00013 1320 SUPERFAMILY FYVE/PHD zinc finger 60 136 IPR011011 -
Stsc181299g00013 1320 ProSiteProfiles Zinc finger C3H1-type profile. 1295 1320 IPR000571 GO:0046872
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 1252 1269 - -
Stsc181299g00013 1320 ProSiteProfiles SWIB/MDM2 domain profile. 257 340 IPR003121 -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 773 916 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 1221 1296 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 1 16 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 828 849 - -
Stsc181299g00013 1320 ProSiteProfiles Plus3 domain profile. 400 533 IPR004343 GO:0003677
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 1221 1247 - -
Stsc181299g00013 1320 MobiDBLite consensus disorder prediction 784 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181299g00013 Stsc-Chr181299 81930 88886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181299g00013 89 172 PHD Transcription Factor Family AT5G36670 35.632 3.50e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Stsc181299g00013 Plus-3 8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181299g00013 - - vun:114173625 1681