Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181299g00008 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCCGCTATTGTTTTCTGCGCCGCTGATGAGGCTGCACTCTGCCGTGCCTGCGATGAGAAGGTTCACATGTGTAATAAACTAGCAAGCAGGCATGTGAGAGTTGGTCTGGCAAGTCCAAGCGATGTGCCTCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTCTATTGCGACACAGATGGAAGCTCCCTTTGTTTGCAGTGTGACATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTCTTTTTAGGCAAAGAGTTGAGTTTCCAGCAGATAAACCTACTCATCACTTAGAAAACCCACCTTCACAACCCACTGACAATAAAAGGGGACAAAATCCACCTCCCAAACTCAAAATCGGGGGAGGGGGGGACAAGCAACAAAACCACAGGATGCCCCTTCTTTCAACACCAGATCCTGATTCTGATGGACATGCCAACATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAACAGATTACATGAACATGCATCAAATAATCAGCCATAA 558 0.4516 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCDTDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPADKPTHHLENPPSQPTDNKRGQNPPPKLKIGGGGDKQQNHRMPLLSTPDPDSDGHANMETKMIDLNMKPNRLHEHASNNQP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181299g00008 185 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Stsc181299g00008 185 Gene3D Classic Zinc Finger 2 91 - -
Stsc181299g00008 185 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Stsc181299g00008 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc181299g00008 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 129 - -
Stsc181299g00008 185 MobiDBLite consensus disorder prediction 106 185 - -
Stsc181299g00008 185 CDD Bbox1_BBX-like 4 47 - -
Stsc181299g00008 185 FunFam B-box zinc finger protein 19 2 92 - -
Stsc181299g00008 185 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Stsc181299g00008 185 Pfam B-box zinc finger 52 91 IPR000315 GO:0008270
Stsc181299g00008 185 SMART bboxneu5 1 47 IPR000315 GO:0008270
Stsc181299g00008 185 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181299g00008 Stsc-Chr181299 66190 68055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181299g00008 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 60.656 4.78e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc181299g00008 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181299g00008 - - gmx:100780544 330.872