Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181299g00004 ATGTTCAACACGAAAATCACACTGGCGGAAACAATCGAGGCAACGAGACAATTCGACGAGGAGAATGTGCTGAGCAGAACAAGGTTTGGACTAGTATTCAAGGCATGCTACAACGATGGCATGGTCCTTTCGGTTCGCAGGCTCCCAGATGGAGCATTGGAGGAGAACACGTTCAGAAAAGAAGCTGAATCATTAGGCAAAGTGAGGCACAGAAATCTAACAGTTCTAAGAGGCTACTACGCTGGGCCACCGGACATGAGACTCTTAGTGTACGACTACATGCCAAATGGAAACCTGGCAACACTACTCCAAGAAGCTTCACATCAAGATGGGCATGTTCTAAATTGGCCAATGCGACACCTCATTGCACTGGGAATTGCTCGGGGATTAGCGTTCCTGCACCAGTCCTCAATGGTCCATGCGGACGTGAAACCACAGAACGTGCTGTTCGATGCAGATTTCGAAGCCCATTTATGTGATTTTGGGTTAGAGAGGCTAACCATAGCAACCCCAAGCGAAGCCTCAACTTCAGGGTCAGTTGGCACATTGGGTTACGTATCCCCAGAAGCAATCTTAACCGGGGAAGCCACCAAGGAGTCTGATGTATACAGCTTTGGCATCGTCTTGCTGGAGCTTCTAACAGGAAAGCGACCCGTCATGTTCACCCAAGACGAAGACATAGTCAAGTGGGTCAAGAAGCAACTACAGAGGGGTCAAATTACTGAGCTACTAGAGCCTGGCTTGCTTGAATTGGACCCTGAATCATCTGAGTGGGAAGAGTTCTTGTTGGGTGTCAAAGTAGGCTTGCTTTGCACCGCACCTGACCCTCTTGACCGACCAACCATGTCCGACATCGTTTTCATGCTCGAAGGCTGCCGTGTCGGCCCTGATATCCCCTCCTCCGCCGATCCAACCTCTCAACCTTCTCCAGCATAA 936 0.4989 MFNTKITLAETIEATRQFDEENVLSRTRFGLVFKACYNDGMVLSVRRLPDGALEENTFRKEAESLGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHADVKPQNVLFDADFEAHLCDFGLERLTIATPSEASTSGSVGTLGYVSPEAILTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181299g00004 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Stsc181299g00004 311 Pfam Protein kinase domain 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181299g00004 311 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 4 292 - -
Stsc181299g00004 311 Gene3D Transferase(Phosphotransferase) domain 1 94 297 - -
Stsc181299g00004 311 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1 93 - -
Stsc181299g00004 311 ProSiteProfiles Protein kinase domain profile. 18 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181299g00004 311 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 94 297 - -
Stsc181299g00004 311 SUPERFAMILY Protein kinase-like (PK-like) 5 299 IPR011009 -
Stsc181299g00004 311 SMART serkin_6 18 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181299g00004 311 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181299g00004 Stsc-Chr181299 36407 37342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181299g00004 1 311 Receptor kinase-like Gene Family AT4G36180 86.262 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Stsc181299g00004 Pkinase 4.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181299g00004 - - gmx:100305362 589.726