Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181298g00009 ATGAAGATCCAGTGTGATGTGTGTCAAAAAGTGGAGGCCTCTTTCTTCTGTCCCTCAGATGAAGCTGCTCTTTGCCATGGATGTGATCGCACAATACACAGTGCCAACAAGGTTGCAACCAAACATACGCGCCTCTCTCTTCATCACCCTAACTTCAAAGACTCCCCTCTTTGTGATATCTGCCAGGAGAGACGTGCATATATATTTTGCCAAGAAGACAGAGCAATACTATGCAGTGAATGTGACGTTTCAATCCATGGAGCCAATGAACACACTAAGAAGCATAACAGATTTCTTCTGACAGGTATAAAGCTTGGTGCTGCTTCTTCTTCTTTTTCTTCGGAGCCAACATCAACGTCCTCCAATGGAGCCACAAGAAGCTCTGAAGCAGCAAATAACCAGAATAATAATAATTATTATATGGGCAGTGACACCGGTTCAGTTTCAACCAGCAGCATTTCTGAGTATTTGATTGAGACCTTACCCGGTTACTGCATGGAAGACCTTCTAGATGCTTCATTTCCACCAAATGGTTTCTGTAAGGAGTATGAGCAGCAATCATTTCAGGACCGAAATAATAATGTTGATCATCATGTCAACATGTGTTCGTTTCCATTGGAAGCATGGTCACCATCATCAACCCCAACTTAG 651 0.4286 MKIQCDVCQKVEASFFCPSDEAALCHGCDRTIHSANKVATKHTRLSLHHPNFKDSPLCDICQERRAYIFCQEDRAILCSECDVSIHGANEHTKKHNRFLLTGIKLGAASSSFSSEPTSTSSNGATRSSEAANNQNNNNYYMGSDTGSVSTSSISEYLIETLPGYCMEDLLDASFPPNGFCKEYEQQSFQDRNNNVDHHVNMCSFPLEAWSPSSTPT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181298g00009 216 CDD Bbox1_BBX-like 5 47 - -
Stsc181298g00009 216 Gene3D Classic Zinc Finger 1 100 - -
Stsc181298g00009 216 FunFam B-box zinc finger protein 21 1 98 - -
Stsc181298g00009 216 CDD Bbox1_BBX-like 57 100 - -
Stsc181298g00009 216 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Stsc181298g00009 216 SMART bboxneu5 53 100 IPR000315 GO:0008270
Stsc181298g00009 216 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc181298g00009 216 MobiDBLite consensus disorder prediction 109 143 - -
Stsc181298g00009 216 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc181298g00009 216 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 190 - -
Stsc181298g00009 216 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Stsc181298g00009 216 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181298g00009 Stsc-Chr181298 71790 73118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181298g00009 1 181 C2C2-CO-like Transcription Factor Family AT1G75540 50.000 5.42e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc181298g00009 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181298g00009 - - gmx:100790232 278.1