Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181298g00004 | ATGGCCTCCGATTCTTCTCCCTTCAACAACGGTCCTTCGTCCCCTGACGATTCCCCCTCAAGCCCAATCGGGAACACCTTCTCCTCCCCCGGCGATGCTGCTCGCCGCAATCGCCGCCGCGGCCGCTCTTCCACACCCTCCGCCTTCAATACCCCACCAGCGCACCGTTCCCGATTTGCCGCAGCCGCCGATGCCACTCCTACTCCGTCTCGTTCCCGGCCGCGATCCGGAGGCGGCGGCCGTGCTCCGTTCACGCCGACCTCCACCGATGACAATCCGGCGTCTTCTGAAGGCGGTGATGGCTTCGACATGGACGACGCCAGGCCTACCTTCGTTTGGGGCACGAACATCAGCGTCCAGGATGTTCACGACGCAATTGAGAGGTTCCTGAGGGACTTTCGAGAAGCTTCTTCGTCACAGAATGATGATGATGACATGTTGCACACCGAAGGGAAGTACGAGAAGCTCATCAAACAGGTGATTGAAGTTGAGGGAGATTCTCTTGATGTTGATGCGAATGATGTGTTCGAACATGACCCTGATTTGTACACCAAGATGGTTAGGTACCCTCTCGAGGTTCTTGCCATCTTTGACTTGGTTCTTATGAATACGGTTGGCAGGATTAAGCCTATGTTCGAGAAGCACATTCAGACTCGGATTTTCAATCTCAAATCCTCTACTACAATGAGGAATTTGAATCCTACTGATATTGAGAGGATGGTGTCAATAAAGGGTATGATTATAAGGTGTAGCTCAATCATACCGGAAATTCGGGAAGCTATATTTAGGTGTCTTGTGTGTGGGAACTGCACCGAGCCTGTTGCTGTAGAGAGAGGACGTATAACTGAGCCAACGATATGCTTGAGGGAAGAGTGTCAATCCAGGAACTCCATGACACTGCTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGACGAGATACCTGAAGGCGGAACTCCTCACACAGTCAGCTTGCTGATGCATGACAAGCTGGTAGATTCTGGAAAGCCAGGAGATAGAGTTGAGGTGACTGGTATATATAGAGCTATGAGTGTCAGAATTGGACCAACTCAGCGAACTGTGAAGTCATTGTTCAAGACCTATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCAAGGATGCTGGTAGACGATGCTATGGACATTGACAATAGCCAAGGCAGAAATCCAGAAGAGGTTCACTTCAATGAAGAAAGGGTGGGTCAACTGAAAGAGCTCTCAAAACAACCAGATATATATGAAAAACTGACAAAGTCATTGGCACCTAACATCTGGGAACTAGACGATGTGAAAAAAGGTCTCCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGCGATATCAATATTCTTCTTGTTGGTGATCCTGGTACTAGCAAGTCTCAGCTTCTTCAATACATTCACAAACTATCTCCTCGTGGCATTTACACTAGTGGAAGGGGGAGTTCTGCCGTTGGATTGACTGCTTACGTGACCAAGGACCCTGAAACAGGGGAAACTGTTCTTGAAAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATTTGCTGTATAGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACTGTTTCTATAGCAAAGGCAGGTATTATTGCTTCCCTGAATGCTAGGACTTCCGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACACTTCTGTCCAGGTTCGATTTAATTTACTTAATTCTTGACAAGGCTGATGAACAGACCGACCGGCGTCTTGCTAAACATATTGTTTCCTTACACTTTGGGAATCCCGAGAGCATAGAGCAAGACGTTTTGGACATATCTACATTAACTGATTATGTGAGCTATGCCCGAAAGCACATACACCCCCAGCTGTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTATGTGGATATAAGAAGAAGAGGAAACTTTCCTGGAAGTAGCAAAAAGGTGATAACAGCAACACCAAGACAGATTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCCCGGATTCGCTTCTCAGATTGGGTTGAAAAGCGCGATGTAATGGAGGCATTTCGGCTTCTTGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACCATCGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGGATGAGACGAGAAGCTTTGTCTCAATTCTGCGATGACGCTCTTATGAGTTCAAATATCCTACAGTTATTGGAAGAGTTGAAGAAACAGAACACTAGCAGTGAAGTTCAACTTACTGATCTAAGGAATGCAGTCGCTACTCTCGCCAGTGAAGGATTCGTTACCATGCACGGTGAAAGCGTTAAAAGATCATGA | 2493 | 0.4689 | MASDSSPFNNGPSSPDDSPSSPIGNTFSSPGDAARRNRRRGRSSTPSAFNTPPAHRSRFAAAADATPTPSRSRPRSGGGGRAPFTPTSTDDNPASSEGGDGFDMDDARPTFVWGTNISVQDVHDAIERFLRDFREASSSQNDDDDMLHTEGKYEKLIKQVIEVEGDSLDVDANDVFEHDPDLYTKMVRYPLEVLAIFDLVLMNTVGRIKPMFEKHIQTRIFNLKSSTTMRNLNPTDIERMVSIKGMIIRCSSIIPEIREAIFRCLVCGNCTEPVAVERGRITEPTICLREECQSRNSMTLLHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDSGKPGDRVEVTGIYRAMSVRIGPTQRTVKSLFKTYIDCLHIKKTDKSRMLVDDAMDIDNSQGRNPEEVHFNEERVGQLKELSKQPDIYEKLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFGNPESIEQDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVDIRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSDWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRREALSQFCDDALMSSNILQLLEELKKQNTSSEVQLTDLRNAVATLASEGFVTMHGESVKRS | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181298g00004 | 830 | Gene3D | - | 116 | 223 | - | - | |
| Stsc181298g00004 | 830 | Gene3D | - | 229 | 368 | IPR012340 | - | |
| Stsc181298g00004 | 830 | Pfam | MCM N-terminal domain | 125 | 222 | IPR027925 | - | |
| Stsc181298g00004 | 830 | Pfam | MCM AAA-lid domain | 654 | 740 | IPR041562 | - | |
| Stsc181298g00004 | 830 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Stsc181298g00004 | 830 | Pfam | MCM P-loop domain | 417 | 638 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | Gene3D | - | 256 | 308 | - | - | |
| Stsc181298g00004 | 830 | SMART | AAA_5 | 470 | 620 | IPR003593 | GO:0016887 | |
| Stsc181298g00004 | 830 | FunFam | DNA helicase | 409 | 747 | - | - | |
| Stsc181298g00004 | 830 | FunFam | DNA helicase | 256 | 308 | - | - | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 529 | 543 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 557 | 570 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 581 | 593 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 616 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 251 | 264 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 444 | 455 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 302 | 314 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 742 | 751 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Stsc181298g00004 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 590 | 607 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Stsc181298g00004 | 830 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 439 | 754 | IPR027417 | - | |
| Stsc181298g00004 | 830 | SMART | mcm | 225 | 742 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | ProSitePatterns | MCM family signature. | 537 | 545 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Stsc181298g00004 | 830 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 124 | 791 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
| Stsc181298g00004 | 830 | SUPERFAMILY | Nucleic acid-binding proteins | 148 | 379 | IPR012340 | - | |
| Stsc181298g00004 | 830 | CDD | MCM4 | 431 | 740 | - | - | |
| Stsc181298g00004 | 830 | Pfam | MCM OB domain | 229 | 358 | IPR033762 | - | |
| Stsc181298g00004 | 830 | Gene3D | - | 409 | 757 | IPR027417 | - | |
| Stsc181298g00004 | 830 | ProSiteProfiles | MCM family domain profile. | 428 | 634 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc181298g00004 | 830 | Coils | Coil | 790 | 810 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181298g00004 | Stsc-Chr181298 | 32862 | 37849 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc181298g00004 | 1 | 829 | Core DNA Replication Machinery Family | AT2G16440 | 71.948 | 0.0 | 1216 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181298g00004 | K02212 | - | gmx:100782586 | 1355.5 |