Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181298g00003 ATGGAAGGGGAAGGGGAAGGGGAAGAAGCATTGAAGGGCATTAGTGGTGGTAGTAGCAGTAGTAGTAGGTGTGTTGCAAAGTGCTCAGATTGTGGGAACCAAGCGAAGAAGGATTGCTCATATAATAGGTGCAGAACTTGTTGCAAGAACAAAGGGTTTCACTGCCCAACCCATGTTAGAAGCACTTGGATCCCTGTCCATACAAGACGCCACAAATCATCACCATCATCATCATCATCGCCACTAGTACTCATGGATCATCATCATCACCATCATCAACAACACTTCCTTCATTCACATATCCCTAAAAGGCACAAGCACATCCCAGAGGAGTTTCCAGCAAGTGTGAGTTCGATGGCAATATTCAGGTGCGTTAGGGTGCGTTCCATGGATGAAAGTGTTAATGAAATTGCGTACCAAACATCTGTCAACATTGGAGGACATCTTTTTACTGGTCTTCTTTATGATCAAGGTCCTCATCATCATCATCATCATCATCAACCACCACCAAGATCTATAGATTATCCTCATCATCATCATCAGCTACAAAGTAATAATAATAATATTATTGATGCTCCTCTTCCTCACCATGACCAACCTTTTATATCATCTTCTTCATCTTATCCTTTACTACCCCTACCTTCTCCTTTTGTTAGGCCTACTCCTAATATGCCATATTATTTTTCATCACCCTCTACCTCTGATTATCCTAAATAA 717 0.4142 MEGEGEGEEALKGISGGSSSSSRCVAKCSDCGNQAKKDCSYNRCRTCCKNKGFHCPTHVRSTWIPVHTRRHKSSPSSSSSPLVLMDHHHHHHQQHFLHSHIPKRHKHIPEEFPASVSSMAIFRCVRVRSMDESVNEIAYQTSVNIGGHLFTGLLYDQGPHHHHHHHQPPPRSIDYPHHHHQLQSNNNNIIDAPLPHHDQPFISSSSSYPLLPLPSPFVRPTPNMPYYFSSPSTSDYPK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181298g00003 238 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 16 208 IPR007818 GO:0003700|GO:0006355
Stsc181298g00003 238 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181298g00003 238 NCBIfam putative zinc finger domain, LRP1 type 27 68 IPR006510 -
Stsc181298g00003 238 Pfam Domain of unknown function (DUF702) 26 160 - -
Stsc181298g00003 238 NCBIfam LRP1 C-terminal domain 112 159 IPR006511 -
Stsc181298g00003 238 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181298g00003 Stsc-Chr181298 14978 16111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181298g00003 27 218 C2H2 Transcription Factor Family AT2G21400 43.434 1.43e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc181298g00003 DUF702 2.1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181298g00003 - - aip:110269564 261.922