Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181297g00015 ATGGAGAACAAAGAAGATGGTGTAAGCAATGGTGGTGGGGATGTGCTACATGATATTGAAAATGAAGGTGTATTGTTGGATGGGAAGGACGGAATTCGGAGGAATTGGTCGGGGTTTTCGGAGAGGAACATGTCTTATGCAGAGCCACTGCTTGCAAAAAGGACTAACACAACCTCCCAGATTGCTATCATTGGTGCCAACCTCAGCCCTATTGAAAGCCTTGATTATGAGATTTTTGAGAATGAAATTTTTAATCAGGACTGGAGGTCCCGGAAGAAGGTTCAGATTATCCAGTATGTGATACTCAAGTGGGGATTTGCTCTTATTATTGGATTAGGCACTGGACTAGTTGGCCTCTTCAATAATATTTCGGTCGAGAACATAGCAGGTTTCAAGTTGCTTCTGACAACCAATCTCATGTCTCAAAACAGATATCTTGAGGCTTTTGTAGCATATGCCGGTATCAGTGTAGTTTTGGCAGCAGCTGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCAGAGGTGAAAGCATATTTGAACGGCGTGGATGCGCATTCTATTCTAGCTCCGAGCACTCTTTTTGTAAAGATTTTTGGTTCAGTCCTTGGAGTTTCTGCTGGATTTGTGGTAGGAAAAGAAGGACCTATGGTACATACAGAGGCAGCTTCATGGTGGAGGAGTGCTCTTTTGTGGAGGACATTTTTCACAACAGCAGTAGTTGCTATTGTTTTAAGAGCTGCAATTCAGTTTTGCGCCACGGGGAGATGCGGGTTATTCGGAGAAGGCGGTCTGATAATGTATGATGTTGGTTCTTCCAAGGTAACATACAGCACTGGCGACGTACTAGCAGCAATACTGTTGGGAGTCATTGGAGGGGTTCTTGGAAGTGTATATAACTACCTTGTGGATAAGGTTGTTCGTACATATAGCATCATCAATGAAAAAGGTCCAGTTTACAAAATCATACTTGTTGTTGCAATTGCTCTTTTGACATCATGTTGCTATTATTTCCTGCCATGGATTGCAACCTGCAAGCCCTGCCCTACTAATACATCGGTGATCTGTCCCTCGGTCGATGAGTCCGGAGAATACAAAAGCTTTCAGTGCAACTCAGGCTACTACAATGATCTTGCTTCTCTCTTCCTAAACACCAATGATGATGCTATTCGCAATCTCTTCAGCTCTAGGATAACCAAGGAGTTTCATATTTCCAGCTTGTTCATCTACTTTGGCACTATCTTCTTTCTTGGGATAGCAACTTATGGTATTGCTGTTCCATCAGGGCTCTTCATTCCTGTTATCCTTGCTGGGGCTGCCTACGGCCGGCTTGTTGGGAGACTATTCGAACCGCTTGTTAAGCTTGACACAGGACTCTTTGCTTTGCTTGGAGCTGCATCCTTTCTTGGTGGAACCATGAGAATGACAGTCTCTATTTGTGTCATATTACTTGAGCTCACAAATGACCTCTTGTTACTTCCACTTGTGATGCTGGTTTTGTTGATTTCTAAATCCGTGGCTGATGGCTTCAACAAGGGTGTCTATGACCAAATCCTGAAGATCAAAGGACTCCCTTATATGGAGTCTCATGCAGAACCTTACATGAGGACTTTGGCTGCTCGAGATGTTGTCTCGGGTCCATTAGTAACCTTTTCCGGCATAGAAAAAGTTGGGAACATACTTCATGCTCTGGAAAGTACAGGACACAATGGTTTTCCTGTGATTGATGAACCACCTTTCTCAGATGCACCAGAGTTGTGTGGACTTGTTCTGAGGTCTCATTTGCTGGTTTTGCTTAAGGGGAAGAACTTCACAAAGGATAGAGTGTTCATGAGCCGAAGCATCTCGCAACGAATTTCAGCATTGGATTTCGCAAAGGCTGGATCAGGGAAAGGATTGAAACTAGAGGATCTTGACATCAATGAGGAAGAGAAGAGTATGTATGTTGATCTTCATCCCATAACCAATGCATCACCATACACAGTGATTGAGACAATGTCACTTGCCAAAGCCGCCATTCTCTTTCGCCAACTCGGACTCAGGCACATGTGTGTTGTCCCAAAGAGCCAAGGGAGACCACCAGTTGTTGGGATTCTAACTCGCCACGACTTTATGCCGGAACATATTTTGGGACTATACCCTGGAATCAAGCCTCACAAAGAGGACTGA 2187 0.4431 MENKEDGVSNGGGDVLHDIENEGVLLDGKDGIRRNWSGFSERNMSYAEPLLAKRTNTTSQIAIIGANLSPIESLDYEIFENEIFNQDWRSRKKVQIIQYVILKWGFALIIGLGTGLVGLFNNISVENIAGFKLLLTTNLMSQNRYLEAFVAYAGISVVLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIFGSVLGVSAGFVVGKEGPMVHTEAASWWRSALLWRTFFTTAVVAIVLRAAIQFCATGRCGLFGEGGLIMYDVGSSKVTYSTGDVLAAILLGVIGGVLGSVYNYLVDKVVRTYSIINEKGPVYKIILVVAIALLTSCCYYFLPWIATCKPCPTNTSVICPSVDESGEYKSFQCNSGYYNDLASLFLNTNDDAIRNLFSSRITKEFHISSLFIYFGTIFFLGIATYGIAVPSGLFIPVILAGAAYGRLVGRLFEPLVKLDTGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKSVADGFNKGVYDQILKIKGLPYMESHAEPYMRTLAARDVVSGPLVTFSGIEKVGNILHALESTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFTKDRVFMSRSISQRISALDFAKAGSGKGLKLEDLDINEEEKSMYVDLHPITNASPYTVIETMSLAKAAILFRQLGLRHMCVVPKSQGRPPVVGILTRHDFMPEHILGLYPGIKPHKED 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181297g00015 728 SUPERFAMILY Clc chloride channel 81 535 IPR014743 -
Stsc181297g00015 728 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 227 716 - -
Stsc181297g00015 728 Gene3D Clc chloride channel 229 533 - -
Stsc181297g00015 728 ProSiteProfiles CBS domain profile. 660 727 IPR000644 -
Stsc181297g00015 728 Pfam CBS domain 664 710 IPR000644 -
Stsc181297g00015 728 Gene3D - 534 716 IPR046342 -
Stsc181297g00015 728 Gene3D Clc chloride channel 94 228 - -
Stsc181297g00015 728 PRINTS Chloride channel signature 203 222 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 PRINTS Chloride channel signature 432 452 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 PRINTS Chloride channel signature 482 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 PRINTS Chloride channel signature 520 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 PRINTS Chloride channel signature 464 480 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 PRINTS Chloride channel signature 172 189 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 SUPERFAMILY CBS-domain pair 536 711 IPR046342 -
Stsc181297g00015 728 Pfam Voltage gated chloride channel 160 229 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 Pfam Voltage gated chloride channel 229 514 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181297g00015 728 CDD CBS_pair_voltage-gated_CLC_euk_bac 546 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181297g00015 Stsc-Chr181297 110910 115781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181297g00015 17 726 Ion Channels AT5G49890 65.201 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181297g00015 K05016 - vvi:100259734 963.755