Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181296g00022 ATGGTTGTGGCGAAGGTGAAGAGACAGAACCTCCAAGCATGCATCACATGCCCTCTCTGCCACCACCTCCTCCGACACGCCACCACCATCTCCCTCTGCCTTCACACCTTTTGCAGGAAGTGCATTTATGAGAAGCTTTCAGATGAGGACATGGATTGTTGTCCTGTATGTTACATTGATCTTGGATGCCTTCCACTCCAAAAACTCAGGCCAGACCACAATTTGCAAGATATTAGGGCCAAAATATTCCCTTTTAGGCGAAGGAAAATCGAAGCCCCGGAAGTTGTTCCTTCCATAACCTTGCCTGCAAAGAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAATGCTCCCAAGGTTTCAAATCAGAATGGCTTCACTGGAAAGAGAACAAAAACTGGCACAAGAAAGGGTGAAGAATCTATAAAGAATGAAGAAACATGTGGTGAAGATAATCTGGGTTCTTTGGTAGCTGATCCTTCTAAGAAGAGGCCTACTGAAGATATCAAGAACAGTATGGAACTTGCAGAAGGGAAGGGTGATCTCTGGACGCCCTTGAACTGTCTCGTTGAAGCTGCCAATCGAACAAAGTCCTCCAGGTCATCGAACTCACACGGGACTCCTGCTGCCAAGTTAGAGTCTCCGTCAACTGCTCCTGTTGGACTAGATATGGCTGAAACTACAACCAAATCAAACCCACCTACTTCATTGAAGAGTGAAGTTCACATGCCTAAAGCTAAAAACAAGGATAATAGACATAAAAGGTTTGGATCTGACAAGGAGGGACAATCCCTGCCTTCAGGACCTTCAGGAAAGCAAAAAAGGCCGATGCGTCCTGTTCGGAAAAGAGCAGAAGCATCTGAGATGTCTGCCTCGGATACCACAGGGAGCAGGTGTGACTGGAAAAACAGTCCTATTTGGTTTTCATTAGTTGCTTCAGAAGACCAGAAAGGAGATGTTCCATTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGTAA 1002 0.4521 MVVAKVKRQNLQACITCPLCHHLLRHATTISLCLHTFCRKCIYEKLSDEDMDCCPVCYIDLGCLPLQKLRPDHNLQDIRAKIFPFRRRKIEAPEVVPSITLPAKRKERSLSSLVVNAPKVSNQNGFTGKRTKTGTRKGEESIKNEETCGEDNLGSLVADPSKKRPTEDIKNSMELAEGKGDLWTPLNCLVEAANRTKSSRSSNSHGTPAAKLESPSTAPVGLDMAETTTKSNPPTSLKSEVHMPKAKNKDNRHKRFGSDKEGQSLPSGPSGKQKRPMRPVRKRAEASEMSASDTTGSRCDWKNSPIWFSLVASEDQKGDVPLPQISACYLRIK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181296g00022 333 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Stsc181296g00022 333 MobiDBLite consensus disorder prediction 121 144 - -
Stsc181296g00022 333 MobiDBLite consensus disorder prediction 221 238 - -
Stsc181296g00022 333 MobiDBLite consensus disorder prediction 242 260 - -
Stsc181296g00022 333 MobiDBLite consensus disorder prediction 194 211 - -
Stsc181296g00022 333 SMART ring_2 17 57 IPR001841 -
Stsc181296g00022 333 MobiDBLite consensus disorder prediction 194 298 - -
Stsc181296g00022 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 333 IPR044807 GO:0004842
Stsc181296g00022 333 SUPERFAMILY RING/U-box 11 81 - -
Stsc181296g00022 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 112 IPR013083 -
Stsc181296g00022 333 ProSiteProfiles Zinc finger RING-type profile. 17 57 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181296g00022 Stsc-Chr181296 118746 120232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181296g00022 2 333 C3H Transcription Factor Family AT2G30580 42.222 9.46e-81 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181296g00022 K16277 - gmx:100783999 444.506