Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181296g00019 ATGCAAAGGGTGTTCTCGGTTGAGGAAATATCAGAGCCATTTATGCTGCCGGCGGTGAAGAAGATGGATGAGTCGACGGCGAAGTCAACGATGAACCGTAGCGCTTCAGAGTGGGCGTTCCAACGGTTTCTGCAAGAAGCTTCTTCGGCGGTATCAGGAACAGTGGCGTCACCGTGTTCTTCGTCTTCGTCGGTGGTTGAGATCAAACAGGACCTCTCACAAAACATGGAAACCAAGCCTCTTCAAAACGGTAGCACAGTTTCCGTTTTGACCAATGGCACTGCTTCATCTCCCCCTCTTTCTTCTTCTGTGGCCGTTGATTCAGAGGATTACCAGACTATCCTTAAGACGAAGCTAAATCTCGCTTGCGCCGCCGTTGCTTTGACCAGGAAATCTTTGGTCAAATCTCAAGTTCCTGCTGCTTTTTCTGAATGTACATCCCAGGCAACTAATCTTTCTCAAGTTGCAACTCATGCTACTTTAAAAGGATCTGGCCCTTCTGAAAATGATTCATGTAAAGTACAAAAGAAAGATCCTAGAGTACCGGTTGGGATTCCTTCCTTGTCTGGTGTGCAAAATAAGCCTGCTGTTGCAATCAGATCAACCACAAGTGGATCATCTAAAGACCAGTCAGATGATGAGGAAGCTGAGGGAGAGATTGATATGTCTGAAAACATGGACCCTTCTGATGCAAAACGAGTAAGGAGGATGCTTTCTAACAGGGAATCTGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTTGAGACACAGGTTTCTCAATTAAGAGGTGAAAATTCATCATTGTTAAAGCGTCTAACAGATATTAGCCATAAATACAATGATGCTGCTGTTGACAACAGAGTATTAAAAGCTGATGTTGAAACCTTAAGAGCAAAGGTAAAGATGGCTGAAGAAACTGTCAAAAGAATTACTGGGTTGAATCCAATGTTTCCAGCCATGGCTGATATATCATCAATGAGAATGCCATCATTTGATGGAAGCCCTTCTGAGACATCAACTGATGCAGCCGTTCCTGTCCAAGAAGACACGAATCATAACTTCTTCCAACGCACTTCAAACAATCCTGTGTCAAGCCCCGATCATAGAGTCAACAATTGGTTGGCAGACATATCTTCAGAAGATAACGTGCAGAAGAAAACTACCGGATCACCAGGTGGGAACAAGATGGGCCGAACACCTTCCTTGCCAAGGGTGGCTAGCTTGGAACATCTTCAGAAGCGAATCCGTGGCACTGCGGATTCATCTGCTCCTGTTTCTAATGGAAAGCACCAATAA 1308 0.4488 MQRVFSVEEISEPFMLPAVKKMDESTAKSTMNRSASEWAFQRFLQEASSAVSGTVASPCSSSSSVVEIKQDLSQNMETKPLQNGSTVSVLTNGTASSPPLSSSVAVDSEDYQTILKTKLNLACAAVALTRKSLVKSQVPAAFSECTSQATNLSQVATHATLKGSGPSENDSCKVQKKDPRVPVGIPSLSGVQNKPAVAIRSTTSGSSKDQSDDEEAEGEIDMSENMDPSDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLLKRLTDISHKYNDAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMFPAMADISSMRMPSFDGSPSETSTDAAVPVQEDTNHNFFQRTSNNPVSSPDHRVNNWLADISSEDNVQKKTTGSPGGNKMGRTPSLPRVASLEHLQKRIRGTADSSAPVSNGKHQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181296g00019 435 Coils Coil 290 310 - -
Stsc181296g00019 435 FunFam BZIP transcription factor 230 281 - -
Stsc181296g00019 435 Coils Coil 241 275 - -
Stsc181296g00019 435 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 235 250 IPR004827 GO:0003700|GO:0006355
Stsc181296g00019 435 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 230 284 IPR004827 GO:0003700|GO:0006355
Stsc181296g00019 435 MobiDBLite consensus disorder prediction 160 257 - -
Stsc181296g00019 435 MobiDBLite consensus disorder prediction 225 241 - -
Stsc181296g00019 435 MobiDBLite consensus disorder prediction 379 399 - -
Stsc181296g00019 435 CDD bZIP_plant_GBF1 233 284 IPR045314 GO:0003700|GO:0006355
Stsc181296g00019 435 Pfam bZIP transcription factor 231 282 IPR004827 GO:0003700|GO:0006355
Stsc181296g00019 435 SUPERFAMILY Leucine zipper domain 232 282 IPR046347 GO:0003700|GO:0006355
Stsc181296g00019 435 Pfam Basic leucine-zipper C terminal 299 422 IPR020983 -
Stsc181296g00019 435 SMART brlzneu 228 292 IPR004827 GO:0003700|GO:0006355
Stsc181296g00019 435 Gene3D - 231 285 - -
Stsc181296g00019 435 PANTHER BASIC LEUCINE ZIPPER 63 1 422 - -
Stsc181296g00019 435 MobiDBLite consensus disorder prediction 379 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181296g00019 Stsc-Chr181296 95368 98428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181296g00019 1 321 bZIP Transcription Factor Family AT4G02640 38.690 2.74e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc181296g00019 bZIP_C 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181296g00019 K25784 - qsa:O6P43_007630 468.388