Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181296g00015 ATGGGAGACGAGGCGAGCCCTGAGTGGATGAACAAGGGAGACAATGCGTGGCAGCTCATGGCGGCAACAATGGTGGGCCTCCAAACCATTCCGGGCCTAGTCATCTTGTACGGAAGCATGGTCAACAAGTCATGGGCCATCAACTCCGCCTTCATGGCCTTCTATGCTTTTGCCGCCGTCATCCTTTGCTGGGCCGCCTGGGCTTACCGCATGTCATTCGGTGAAGAGTGGGTGTTTTTCGTGGGAAAGCCCGCGGCGGCGTTGGACGAGAAGTTCCTTCTAGGGCAGGCCTTTCTGGGAGCGTTACCTACGGCAACCATGGTGTTCTTCCAAGGAGTGTTTGCGGCCATCACTCTCGTCCTGATTGGTGGTTCATTGCTTGGAAGAATGAACATCCGTGCATGGATGTTGTTTGTTCCTCTCTGGCTCACTTTTTCATACACCGTCACCGCTTTCAGTATTTGGAGCCCTAATGGCTGGTTAGCTAAGCGTGGAGTTATTGACTTTGCTGGTGGCTTTGTTATTCACCTCTCCGCCGGAGTTGCCGCCATTACCGCAGCTTTCTGGGTGGGTCCAAGAGAAGAGAAGGAGAAAGTAACATTGGATTCAAATAATATGATTGTAGCCTTGGGAGGTGCGGGCTTGGTTTGGATGGGGTGGTCGGGCTTCAATGGTGGAGGCCCGTTCGCTGTGAACACAGTTGCATCTCTGGCAATCCTAAACACTCATGTCTGCGCTGCAACTAGCATCATCACATGGCTCATTTTCGACACTTTCCATTCCGGTAAGCCCACCGTGTTTGGCGCCATTCAAGGCATGATCACCGGCCTTGTTTGCATTACACCAGCCGCAGGAATAGTGCAAGGCTGGGCTGCAATTTTGATGGGCTTTATCTCCGGAAGTGTACCGTGGTACACGTTAACGGTGGTTCACCATAAGATCAAATTGCTAAACACAATAGATGATCCAATGGCCATATTCCACACACATGCCATAACCGGAACTCTTGGAGGAATTCTGACAGGATTATTTGCTGTTCCTAAATTGTGTCGTCTCTTCTATGGAGTGCCTGATTGGGAGAAATACACTGGACTCTTCTATGGGCTTCAAAATGGTTCGGCCCATGCTGGTTTGAAACAGTTGTGGATCCAATTAGAAGCCATTGCTTTCGTGGTTATGTTCAATGTTATTATTACGAGCTTGATATGCTTGGGTGTGAGGGGCATAGTGCCACTAAGGGTTGATGCATTGGAAGTGGGTGGTGACATTGCCATGCATGGAGAAGAGGCATTTGCCTTGTGTTGCTCTGAGGATAGGGATGGCAAGTTTGAGAATGTAAAGCGGAACAGGATTTATGACACACAAGATTTTCCGTCGTCTATTGACGAATCATCTAGGACGATGACTGTTAGTGAATCTCAAATGGTTTGA 1431 0.4941 MGDEASPEWMNKGDNAWQLMAATMVGLQTIPGLVILYGSMVNKSWAINSAFMAFYAFAAVILCWAAWAYRMSFGEEWVFFVGKPAAALDEKFLLGQAFLGALPTATMVFFQGVFAAITLVLIGGSLLGRMNIRAWMLFVPLWLTFSYTVTAFSIWSPNGWLAKRGVIDFAGGFVIHLSAGVAAITAAFWVGPREEKEKVTLDSNNMIVALGGAGLVWMGWSGFNGGGPFAVNTVASLAILNTHVCAATSIITWLIFDTFHSGKPTVFGAIQGMITGLVCITPAAGIVQGWAAILMGFISGSVPWYTLTVVHHKIKLLNTIDDPMAIFHTHAITGTLGGILTGLFAVPKLCRLFYGVPDWEKYTGLFYGLQNGSAHAGLKQLWIQLEAIAFVVMFNVIITSLICLGVRGIVPLRVDALEVGGDIAMHGEEAFALCCSEDRDGKFENVKRNRIYDTQDFPSSIDESSRTMTVSESQMV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181296g00015 476 Gene3D Ammonium transporter AmtB like domains 2 449 IPR029020 -
Stsc181296g00015 476 ProSitePatterns Ammonium transporters signature. 168 193 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc181296g00015 476 SUPERFAMILY Ammonium transporter 9 414 - -
Stsc181296g00015 476 PANTHER AMMONIUM TRANSPORTER MEP2 3 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc181296g00015 476 Pfam Ammonium Transporter Family 16 431 IPR024041 GO:0008519|GO:0016020|GO:0072488
Stsc181296g00015 476 PRINTS Rhesus blood group protein signature 111 127 IPR002229 GO:0005886
Stsc181296g00015 476 PRINTS Rhesus blood group protein signature 238 260 IPR002229 GO:0005886
Stsc181296g00015 476 PRINTS Rhesus blood group protein signature 331 347 IPR002229 GO:0005886
Stsc181296g00015 476 PRINTS Rhesus blood group protein signature 207 225 IPR002229 GO:0005886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181296g00015 Stsc-Chr181296 72612 74441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181296g00015 105 470 Inorganic Solute Cotransporters AT2G38290 49.591 1.40e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181296g00015 K03320 - gmx:100782944 712.99