Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181296g00008 ATGGATCCCCCGCAGCTCCCTTGTGACACTAAAACCCTTCCTGCTGAATTCTTCAAAGTTTACTTGCCCCAAACAAGTTCTACTCACTTGCGCATACCAAAGGCTTTCAGCGCCAAGTTCATCAATCGGAAAATAGCAAGAAAGGTCGCTGTTGTAGATCATGAAGGGAACTCTTGGGATGTTGAGTTAAAGAAGATGGAGGATGGATTATTGGTCTTCAAGAATGGGTGGCAAGACTTTGCTAGAGACAAGTGTTTGGAACAAGCTGATTTCTTGGTCTTTGAGTATGATGGCAAGTCCAAGTTTCATGTGAAGATATTTTCCAAAAGTGGATGCAGAAAAGAAGCTGCAAATTGTAGCAGGAAACTTGACCCCATTGTGATCTCGGATGATGATGAAGATTCTGATCATCAGAATAGTAAAAGAAAGCAAAGGAAACTTTCGCCAACATCAGTACTCATAGTGAATGAGAAACCTCACTCAAAAAAGGGAACTACTGTGGGGAAATCAAAAGGAGCTAAGCGTGAGAGCAAGGCATCTGGCCTTGTGAAGGACCCCCATTTTGTGATACCTATGTCACACTGGAGAATGTACAAAATTGAAATTCCTAGAAGAGTAATGAATGAATTGAATATCAAACTAAAGTCAGGAATTAAATTGAGAGATGAGAACGACAAGCTATGGCCGGTGAAGATCACCACGACGGGCGGACGCCTCTACTTGGCAGATGGGTGGTCTAGGTTCTGGAAGGCTAAAAGTATTGAAGAGGGCAACGTTTGTGATTTCAAGTTTGTTGTTGGCAAAGCAAATAGTGCTGAAGAACTGCTTGTGCGAGTACGCTCACCTTAA 849 0.4264 MDPPQLPCDTKTLPAEFFKVYLPQTSSTHLRIPKAFSAKFINRKIARKVAVVDHEGNSWDVELKKMEDGLLVFKNGWQDFARDKCLEQADFLVFEYDGKSKFHVKIFSKSGCRKEAANCSRKLDPIVISDDDEDSDHQNSKRKQRKLSPTSVLIVNEKPHSKKGTTVGKSKGAKRESKASGLVKDPHFVIPMSHWRMYKIEIPRRVMNELNIKLKSGIKLRDENDKLWPVKITTTGGRLYLADGWSRFWKAKSIEEGNVCDFKFVVGKANSAEELLVRVRSP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181296g00008 282 CDD B3_DNA 186 281 IPR003340 GO:0003677
Stsc181296g00008 282 ProSiteProfiles B3 DNA-binding domain profile. 185 282 IPR003340 GO:0003677
Stsc181296g00008 282 Gene3D - 182 279 IPR015300 -
Stsc181296g00008 282 Gene3D - 10 112 IPR015300 -
Stsc181296g00008 282 MobiDBLite consensus disorder prediction 128 180 - -
Stsc181296g00008 282 MobiDBLite consensus disorder prediction 128 143 - -
Stsc181296g00008 282 SUPERFAMILY DNA-binding pseudobarrel domain 185 265 IPR015300 -
Stsc181296g00008 282 Pfam B3 DNA binding domain 17 109 IPR003340 GO:0003677
Stsc181296g00008 282 Pfam B3 DNA binding domain 198 280 IPR003340 GO:0003677
Stsc181296g00008 282 SMART B3_2 188 273 IPR003340 GO:0003677
Stsc181296g00008 282 SMART B3_2 17 110 IPR003340 GO:0003677
Stsc181296g00008 282 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
Stsc181296g00008 282 CDD B3_DNA 17 108 IPR003340 GO:0003677
Stsc181296g00008 282 PANTHER B3 DOMAIN-CONTAINING 183 264 - -
Stsc181296g00008 282 ProSiteProfiles B3 DNA-binding domain profile. 15 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181296g00008 Stsc-Chr181296 40506 42096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181296g00008 16 281 B3 DNA Binding Superfamily AT5G66980 31.715 1.42e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc181296g00008 B3 4.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181296g00008 - - ahf:112695440 409.453