Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181296g00006 ATGGGGAAGGCAGGTAAATGGATTAGAAACTTTCTTATGGGGAAAAAGGAAGATAAGTACAAGAAGATTGATGCAGTCCGTGCTGAGAGTAAGAGCTCTGCAATGGATAGTCCCAAAGTGAAGCGCAGATGGAGCTTCGGAAGACTAACAATGGGAAGAACATCAGGCAAGGTAGCAGGGCATAAATTTTCCTTATCTTTTGACTCCGGTGACTCTGCTAAATTGCAAGCTCAGCCTCCAAGGAGGAGTCTTCCAATAGTAGAGTTCAAGGCTTCTATCAACACCAGATCTAAAAACTCGGCGGCTACAATGATTCAAGCTGCCTTTCGCTCCTATCTGGCTAAGAAAGCATTGCATGCTTTAAGGGGATTAGTGAAGATACAAGCACTAGTGAGGGGTCACCTTGTAAGGAAACAAACAACTGCTACACTGCGCAGCATGCATGCATTGATGGCCATACAAGTTAGAGCTCGGATTCAAAGAATTCAGATGGTAGAGGAAGCAAATCTTCATGGAAAACAGCCTGTGCAACACACACAAATTCCACACAGAAGAGAATCGAATCATATGACTGTGGAAGAAATGCTGGAGGCATTGAAAAGCAGAAGTCAGTCGCTAGATCGCTCGCAAGTTAAGGGAATAAAGCATGAATCCATGGCATTCTATTCGAAGCACAAGTCAGTCTCAGAAAGACAACTTGAGTACAATGACAACAGTTTAATCACAGCACCCAACAGCCCAGAAAACTACTGGGGCTTGTCGGAATATAACACGACAGCAATGGCTGTGTCAACTCCACGGCGATCTCACCGGCAATCACAGTCACCAAATTTCATGAACAATACAGTGTCTTCAAAGGCGAAAGCAAGGTCTCAGAGTGAACCAAAACAACGACCCAGACGTGGAAAGAAGCAGAGAAGCAAGTCCCCAGAATCTACCAAAGAACCTAGTACCTCGCATAATGGTCCAATGCAAAATCTGCACTTAAACTCGTCACGCTTTGACCTTGGAACTTTAGACCATTGGGTTGTTAACCTTTATGGGTCAACAGCTAAGGACAGCGAGCGCAATTCTTTTGGCAGCAGCACGGTGACTAGTGATTCCTACTATTGA 1113 0.4474 MGKAGKWIRNFLMGKKEDKYKKIDAVRAESKSSAMDSPKVKRRWSFGRLTMGRTSGKVAGHKFSLSFDSGDSAKLQAQPPRRSLPIVEFKASINTRSKNSAATMIQAAFRSYLAKKALHALRGLVKIQALVRGHLVRKQTTATLRSMHALMAIQVRARIQRIQMVEEANLHGKQPVQHTQIPHRRESNHMTVEEMLEALKSRSQSLDRSQVKGIKHESMAFYSKHKSVSERQLEYNDNSLITAPNSPENYWGLSEYNTTAMAVSTPRRSHRQSQSPNFMNNTVSSKAKARSQSEPKQRPRRGKKQRSKSPESTKEPSTSHNGPMQNLHLNSSRFDLGTLDHWVVNLYGSTAKDSERNSFGSSTVTSDSYY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181296g00006 370 Pfam IQ calmodulin-binding motif 125 139 IPR000048 GO:0005515
Stsc181296g00006 370 Pfam IQ calmodulin-binding motif 100 118 IPR000048 GO:0005515
Stsc181296g00006 370 Gene3D - 96 151 - -
Stsc181296g00006 370 ProSiteProfiles IQ motif profile. 122 149 IPR000048 GO:0005515
Stsc181296g00006 370 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Stsc181296g00006 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 141 IPR027417 -
Stsc181296g00006 370 PANTHER IQ-DOMAIN 5-RELATED 1 323 - -
Stsc181296g00006 370 MobiDBLite consensus disorder prediction 262 330 - -
Stsc181296g00006 370 SMART iq_5 97 119 IPR000048 GO:0005515
Stsc181296g00006 370 SMART iq_5 120 141 IPR000048 GO:0005515
Stsc181296g00006 370 MobiDBLite consensus disorder prediction 262 290 - -
Stsc181296g00006 370 Pfam Protein of unknown function (DUF4005) 260 322 IPR025064 -
Stsc181296g00006 370 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181296g00006 Stsc-Chr181296 33180 35769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181296g00006 1 299 IQD Protein Family AT4G14750 38.710 1.76e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181296g00006 - - gmx:100781320 402.519