Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181296g00005 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCACTTCTTGTCAAGCATAAGCATGAGAAGAAAAAATATGTTTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGTTCTCGCAGGTCCGCACACCAGGAGATGGAGCTCATTTCTAAATTAAGAAATCCATTTATAGTAGAATACAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATCATTATAGGTTATTGTGAAGGTGGAGATATGGCAGAAATTATAAAGAAAGCTAATGGCGTCATGTTTTCTGAGGAGAAACTTTATGATCTTACTTCCTCTGTTGTGGGAACACCTAGCTACATGTGCCCTGAGCTCCTTGCTGACATACCCTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGGCCTCGCTTAAGCCTGCCTTTAAAGCATTTGATATCCAAGCACTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTACCAACAAAATATTCTATTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAACCCAGAGCTTAGGCCTAGTGCTGCAGAGCTACTTGGGCACCCACATCTTCAACCTTATGTTCTTAAGATCCATCTCAAAATTAATAGCCCCAGGCAAAATACATTAGCAGGTCGTTGGCCAGAATCCGACTACATTAAGAAAACTAGACTTTTTAGCCTGGAAGATGATCCCGTTTCCATATATAGGGATAAGTGGAATTCTTGCAGCAATGATCGGAATTTAAATCCTAGTATATCTGGAGCAGAGCAAGATTCTCATTGCTCTACCCTGGAAATAGATTGTAATCCTGATCATTTGAATGAAAGATTAGCAGAACTGGAAGTTGAGGATAACCATGAGGTAAAGTCAATCCACAAGCCAGTTGTTTCTAGAACTTCTACCATTGGCAAGACTTCAAGACTCACTTCATCAAAAGCTTCTGCTAACAAGAAGAAATCAATAGAACCCTCAAATAATTATAAGCTTCCTGCTTCTCACCACAACACCAAACAACCTATCCATGTTCCGAGTCGCAGAGTATCACTGCCGATACCAAGAAGGGGTGCCATTCAGCAGCTGCCTCACAGGCCCAGCATTGGCTTACTTGACCATTTAAATTCACCCAATGTCTCGGTTAACAACCCCCGTATTGATAAAATAGCAGAGTTTCCATTAGCATCATATGAAGATCAATTGTTTCCCATTACTAGACCTTCATCAACTTCTGCAAAGGGCACCCCGGCCTGTGTCAATGATTCAACAATGGTAGACAAATGTACAATCGAGCTATGCGATGGAGCCTACACCAAACCAAAATCTACAGATTCTTGGCAGGGAATCAAGCGCAGCATATTAAAGGATGATGAGGCTAAAAGTGGCTCATCCGATCAAAATGCAACTGCTGGCGCATCAAGTAACAACTCTTCAGACCTGCGGCGCCGACAGTTCGACACTTCTTCATTCCAACAAAGGGCTGAAGCCTTAGAAGGTTTGCTTGAGTTTAGCGCAAGACTACTACAACAAGAAAGGTACGATGAACTTGGAGTTTTATTAAAACCATTTGGGCCCGAGAAGGTTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGCTTCAAAGACAATAATGCCAACCGGGAACAATCGGTGTAA 1707 0.4183 MEQYEVLEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEIIKKANGVMFSEEKLYDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMASLKPAFKAFDIQALINKINKSIVAPLPTKYSIAFRGLVKSMLRKNPELRPSAAELLGHPHLQPYVLKIHLKINSPRQNTLAGRWPESDYIKKTRLFSLEDDPVSIYRDKWNSCSNDRNLNPSISGAEQDSHCSTLEIDCNPDHLNERLAELEVEDNHEVKSIHKPVVSRTSTIGKTSRLTSSKASANKKKSIEPSNNYKLPASHHNTKQPIHVPSRRVSLPIPRRGAIQQLPHRPSIGLLDHLNSPNVSVNNPRIDKIAEFPLASYEDQLFPITRPSSTSAKGTPACVNDSTMVDKCTIELCDGAYTKPKSTDSWQGIKRSILKDDEAKSGSSDQNATAGASSNNSSDLRRRQFDTSSFQQRAEALEGLLEFSARLLQQERYDELGVLLKPFGPEKVSPRETAIWLSKSFKDNNANREQSV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181296g00005 568 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc181296g00005 568 MobiDBLite consensus disorder prediction 471 503 - -
Stsc181296g00005 568 SUPERFAMILY Protein kinase-like (PK-like) 1 256 IPR011009 -
Stsc181296g00005 568 Gene3D Transferase(Phosphotransferase) domain 1 90 247 - -
Stsc181296g00005 568 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 108 518 - -
Stsc181296g00005 568 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Stsc181296g00005 568 MobiDBLite consensus disorder prediction 315 361 - -
Stsc181296g00005 568 ProSiteProfiles Protein kinase domain profile. 4 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181296g00005 568 MobiDBLite consensus disorder prediction 315 360 - -
Stsc181296g00005 568 Pfam Protein kinase domain 110 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181296g00005 568 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Stsc181296g00005 568 MobiDBLite consensus disorder prediction 479 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181296g00005 Stsc-Chr181296 29644 33986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181296g00005 10 209 MAP Kinase Kinase Kinase AT1G53570 26.087 1.57e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc181296g00005 Pkinase 1.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181296g00005 K08857 - gmx:100796019 842.802